The miRNAome of the postpartum dairy cow liver in negative energy balance

BMC Genomics

Table 1 Read statistics for SNEB and MNEB postpartum dairy cow liver miRNA-seq data

Sample^*	Processed reads	Untrimmed reads	Reads after QC	Reads aligning to UMD3.1.68†	Reads aligning uniquely to UMD3.1.68	Reads aligning to genes
7S	35,531,177	319,143	33,034,345	29,929,732	22,008,536	21,617,227
8S	42,701,190	212,634	42,060,747	39,510,950	28,788,096	28,526,343
9S	39,733,845	276,697	35,308,457	32,324,504	24,940,747	24,682,635
10S	37,834,521	326,905	34,658,341	31,140,804	22,754,746	22,477,046
2M	35,079,188	272,113	32,996,280	30,024,759	23,042,362	22,809,423
3M	44,401,783	289,778	43,107,430	40,269,999	30,931,375	30,757,376
4M	40,699,727	280,820	32,868,631	29,571,511	23,373,573	23,050,065
5M	38,751,887	198,345	38,079,095	36,361,987	34,268,099	33,963,761
Sum	314,733,318	2,176,435	292,113,326	269,134,246	210,107,534	207,883,876
Average	39,341,665	272,054	36,514,166	33,641,781	26,263,442	25,985,485

*S = SNEB; M=MNEB.
†UMD3.1.68 = Ensembl v68 annotation of the UMD3.1 assembly of the bovine genome.

ISSN: 1471-2164