Table 2 Genomic regions present in D. solani 3337 and absent in D. dadantii 3937
Genomic regions | Genes ID | Presence of horizontal transfer signature | Predicted function | Presence in other Dickeya |
|---|---|---|---|---|
GR-1 | 0295-0300 | Yes | Metabolism | |
GR-2 | 0366-0379 | Yes | Urea transport and metabolism | D. chrysanthemi 1591 (8 genes/13) |
GR-3 | 0946-0954 | No | NRPS - PKS | D. zeae 586 (5 genes/9) |
GR-4 | 1135-1144 | No | - | |
GR-5 | 1151-1160 | No | Transport - metabolism | |
GR-6 | 1191-1198 | No | Metabolism | |
GR-7 | 1269-1292 | No | Transport - metabolism | D. zeae 586 (4 genes/20) |
GR-8 | 1634-1640 | No | Transport - metabolism | |
GR-9 | 1988-2010 | No | PKS - NRPS | D. paradisiaca 703 (whole cluster) |
GR-10 | 2094-2099 | No | Transport - metabolism | D. paradisiaca 703 (whole cluster) |
GR-11 | 2316-2323 | Yes | Phage-related | |
GR-12 | 2512-2529 | No | Lipid metabolism | D. zeae 586 (13 genes/20) |
GR-13 | 2984-3005 | Yes | Phage/Tn-related | |
GR-14 | 3131-3143 | Yes | Metabolism | |
GR-15 | 3336-3342 | No | Transport | |
GR-16 | 3380-3395 | Yes | - | |
GR-17 | 3524-3541 | Yes | Metabolism | |
GR-18 | 3621-3638 | No | Transport - metabolism | D. zeae 586 (9 genes/16) |
GR-19 | 4035-4053 | No | PKS - NRPS | |
GR-20 | 4101-4110 | Yes | Transport - metabolism | |
GR-21 | 4146-4155 | No | Metabolism (putative) | |
GR-22 | 4167-4173 | No | Metabolism (putative) | |
GR-23 | 4292-4297 | Yes | Galactonate transport and metabolism | |
GR-24 | 4305-4355 | Yes | rhsB- T4SS | |
GR-25 | 4463-4479 | No | Metabolism? |