Table 4 Characteristics of high confidence and low confidence gene sets
From: An improved genome release (version Mt4.0) for the model legume Medicago truncatula
High confidence (HC) | Low confidence (LC) | |
|---|---|---|
Number of genes | 31,661 | 19,233 |
Number of single-exon genes | 6,103 (19%) | 5,351 (28%) |
Number of multi-exon genes | 25,558 (81%) | 13,882 (72%) |
Number of genes with alternative transcript variants | 6,041 (19%) | 347 (2%) |
Number of predicted transcripts | 42,481 | 19,838 |
Number of distinct exons | 174,533 | 52,850 |
Mean gene locus size (first to last exon) | 3,280 | 1,526 |
Mean transcript size (UTR, CDS) | 1,618 | 841 |
Mean number of transcripts per gene | 1.3 | 1.0 |
Mean number of distinct exons per gene | 5.5 | 2.7 |
Mean exon size | 308 | 296 |