Table 1 Pyrenochaeta lycopersici genome statistics
From: De novo genome assembly of the soil-borne fungus and tomato pathogen Pyrenochaeta lycopersici
| Â | Scaffolds | Contigs |
|---|---|---|
Number of sequences | 7,079 | 18,757 |
Maximum sequence length (bp) | 768,125 | 440,042 |
Average length (bp) | 7,747 | 2,856 |
N50 (bp) | 73,363 | 33,727 |
N90 (bp) | 313,035 | 127,052 |
Sequences > 500bp | Scaffolds | Contigs |
Number of sequences | 5,176 | 10,176 |
Average length (bp) | 10,479 | 5,037 |
N50 (bp) | 75,634 | 37,929 |
N90 (bp) | 315,231 | 10,146 |
Sequences > 1Kb | Scaffolds | Contigs |
Number of sequences | 4,056 | 5,863 |
Average length (bp) | 13,174 | 8,217 |
N50 (bp) | 76,086 | 43,602 |
N90 (bp) | 315,231 | 130,015 |
Sequences > 5Kb | Scaffolds | Contigs |
Number of sequences | 1,530 | 1,350 |
Average length (bp) | 30,926 | 29,077 |
N50 (bp) | 96,502 | 55,291 |
N90 (bp) | 369,997 | 139,267 |
Sequences > 10Kb | Scaffolds | Contigs |
Number of sequences | 784 | 858 |
Average length (bp) | 53,680 | 41,789 |
N50 (bp) | 112,715 | 62,806 |
N90 (bp) | 391,898 | 139,822 |
Total number of assembled bases (without Ns) | 54,841,665 bp (53,572,698 bp) | |
Estimated x-fold genome coverage | 217× | |
GC percentage content | 39.40% | |
Number of annotated gene loci | 17,411 | |
Number of annotated putative transcripts | 27,275 | |
Mean gene size (bp) | 2,015 | |
Mean exon size (bp) | 676.6 | |
Mean number of exons per gene | 4.1 | |