From: Inference of high resolution HLA types using genome-wide RNA or DNA sequencing reads
HLA resolution | Dataset | Read length | PHLAT | HLAminer | HLAforest | seq2HLA | |
---|---|---|---|---|---|---|---|
Accuracy | Accuracy | Apparent accuracy | Accuracy | Accuracy | |||
4-digit | HapMap RNAseq | 2×37 bp | 92.3% | 39.8% | 43.0% | 84.2% | ~32% |
1000 Genome WXS | 2×100 bp | 95.0% | 55.0% | 71.0% | 77.0% | - | |
HapMap WXS | 2×101 bp | 93.3% | 53.3% | 84.4% | 45.6% | - | |
Amplicon seq | 2×250 bp | 100% | 50.0% | 55.0% | - | - | |
2-digit | HapMap RNAseq | 2×37 bp | 99.1% | 71.1% | 71.6% | 97.3% | 97.2% |
1000 Genome WXS | 2×100 bp | 97.0% | 83.0% | 85.0% | 95.0% | 90.0% | |
HapMap WXS | 2×101 bp | 95.6% | 78.9% | 88.9% | 81.1% | 93.3% | |
Amplicon seq | 2×250 bp | 100% | 95.0% | 95.0% | - | - |