From: Functional annotation signatures of disease susceptibility loci improve SNP association analysis
Variant | Locus | MAF | LOF | log(BFA) | RankA | RankA+F |
---|---|---|---|---|---|---|
rs2072590 | 2q31 | 0.34 | 1.46 | 8.63 | 65 | 59 |
rs2665390 | 3q25 | 0.09 | 0.77 | 8.08 | 77 | 73 |
rs10069690 | 5p15 | 0.23 | 0.91 | -1.38 | 1,549,122 | 651,710 |
rs11782652 | 8q21 | 0.08 | 0.22 | 2.98 | 5,272 | 6,843 |
rs7814937 | 8q24 | 0.12 | 1.54 | 14.61 | 21 | 16 |
rs3814113 | 9p22 | 0.30 | -0.09 | 14.01 | 38 | 38 |
rs7084454 | 10p12 | 0.31 | 1.44 | 1.19 | 45,616 | 12,221 |
rs757210 | 17q12 | 0.37 | 1.74 | 2.31 | 11,630 | 2,411 |
rs2077606 | 17q21 | 0.18 | 0.70 | -0.25 | 339,456 | 200,494 |
rs9303542 | 17q21 | 0.27 | 0.05 | 3.70 | 2,276 | 3,532 |
rs8170 | 19p13 | 0.19 | 0.82 | 2.72 | 7,133 | 4,179 |
Mean | True + | 0.23 | 0.87 | 5.15 | 178,246 | 80,143 |
Median | True + | 0.23 | 0.82 | 2.98 | 5,272 | 3,532 |
Mean | True − | 0.35 | 0.11 | 0.37 | 438,664 | 517,810 |
Median | True − | 0.36 | 0.06 | 0.14 | 181,116 | 244,393 |