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Figure 2 | BMC Genomics

Figure 2

From: Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools

Figure 2

Quality parameters of FPs. A, cumulative assembly length of contigs from 360 FPs in the production set longer than a given threshold. Each colored line represents a distribution of total assembled length per pool by taking into account contigs longer than the specified length (0…20 kbp). B, length distribution of contigs that contained both fragments that matched start and end of the vector sequence (from 79 FPs produced with four different vectors). The expected range length was 27…47 Kbp, hence the outliers emerged due to either damaged Fosmids or mis-assembly. C, distribution of coverage across different contigs in pools (from 360 FPs in the production set). Bins of the histogram represent the number of FPs that have coverage not worse than the threshold specified in the color legend. For example, the highest point of the green line tells that there were 170 FPs in which 97% of contigs were covered at least 10x (as average along the contig length). A, B, C.

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