Table 2 Gene annotation and coding sequences reconstruction using BLASTX to OMA browser mouse protein database
From: Characterization of the kidney transcriptome of the South American olive mouse Abrothrix olivacea
Minimum % of CDS reconstructed | Range (of individual libraries) | DigiNorm | Multireads | TrinityNorm | Library union | ||
|---|---|---|---|---|---|---|---|
min | max | ||||||
Genes | 99 | 3090 (3102) | 5021 (5037) | 5211 (5245) | 7017 (7053) | 5895 (5926) | 7060 (7131) |
Contigs | 4371 | 7763 | 15815 | 14881 | 13671 | n/a | |
Genes | 90 | 4534 (4557) | 6882 (6916) | 7354 (7436) | 9467 (9543) | 8252 (8325) | 9290 (9434) |
Contigs | 6861 | 11361 | 26904 | 22137 | 21825 | n/a | |
Genes | 80 | 5706 (5745) | 8636 (8636) | 8530 (8665) | 10377 (10480) | 9347 (9467) | 10104 (10367) |
Contigs | 5422 | 14129 | 36814 | 26745 | 28270 | n/a | |
Genes | 50 | 8025 (8138) | 9905 (10089) | 12261 (12610) | 12587 (12818) | 12498 (12769) | 11874 (12544) |
Contigs | 14168 | 25674 | 76156 | 40607 | 51140 | n/a | |
Total genes | 11564 (11941) | 12988 (13434) | 15095 (15717) | 14788(15204) | 15077 (15605) | 14618 (15772) | |
Total contigs | 32934 | 55332 | 157390 | 70380 | 100786 | n/a | |