Structured RNAs and synteny regions in the pig genome

BMC Genomics

Table 3 Annotation of unannotated block groups

The transcripts from the small RNA study without annotation by the homology based pipeline were analysed with blockbuster resulting in 586 transcripts (block-groups). The table displays a comparison of the de novo annotation of these block-groups by deepBlockAlign and with miRDeep. The table shows a comparison of the deepBlockAlign and miRDeep annotation of the 586 unannotated block groups. The second column contains the 546 block groups not annotated by miRDeep, the third column the 40 block groups annotated by miRDeep and the fourth is the sum of the two previous columns, i.e. all 586 block groups. The rows contain the deepBlockAlign annotations: the second row contains the block groups without deepBlockAlign(dba) annotation, rows 3–7 contains the deepBlockAlign classifications, row 8 is the sum of rows 3–7, and finally row 9 is the sum of rows 2 and 8, that is all 586 block groups and depending on the column, their miRDeep annotation.

ISSN: 1471-2164