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Table 4 Comparison of the CAZy repertoire identified in the selected white-rot and brown-rot fungal genomes

From: The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

CAZy familiesa

Aude

Cesu

Disq

Fome

Galu

Gano

Hean

Phch

Pust

Pyci

Scco

Sthi

Trve

Copu

Dac

Fopi

Gltr

Popl

Sela

Woco

GH1

1

3

4

5

3

3

2

2

1

1

3

3

2

3

1

2

5

2

3

1

GH2

7

4

4

2

3

3

3

2

4

3

4

3

5

5

3

4

4

3

3

3

GH3

14

6

8

8

12

13

12

11

14

7

12

17

13

13

9

12

11

6

11

8

GH5

43

18

19

20

19

18

16

19

18

17

16

20

22

21

24

19

19

17

20

18

GH6

2

1

1

2

1

1

1

1

1

1

1

1

1

2

0

0

0

0

1

0

GH7

8

3

4

2

3

3

1

9

5

3

2

3

4

2

0

0

0

0

0

0

GH10

4

6

5

4

7

10

2

6

5

2

5

6

6

3

3

2

3

3

1

4

GH11

3

1

0

0

0

0

0

1

1

0

1

1

0

0

0

0

0

0

0

0

GH12

1

2

3

3

3

3

4

2

2

3

1

5

5

4

1

2

2

2

1

2

GH13

10

7

10

6

9

8

8

9

10

7

13

14

7

6

11

7

9

7

7

11

GH15

2

3

2

1

3

3

5

2

4

1

3

3

4

2

2

4

2

2

2

2

GH26

0

0

0

0

0

0

0

0

0

0

1

0

0

0

4

0

0

0

0

0

GH27

5

4

6

4

6

3

4

3

5

1

1

5

4

4

2

4

3

3

3

3

GH28

14

6

7

17

13

10

8

4

13

4

3

17

11

13

6

12

10

8

7

9

GH29

3

0

0

0

0

0

2

0

1

0

2

4

0

4

2

0

1

0

1

0

GH31

11

5

6

5

6

7

10

6

8

5

4

8

5

12

6

5

5

4

5

5

GH32

2

0

2

0

1

1

1

0

1

1

1

1

3

2

1

3

1

0

0

0

GH35

6

1

3

2

10

7

4

3

4

2

4

7

2

2

1

2

2

1

3

2

GH36

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

0

0

0

0

GH43

28

2

7

7

11

12

4

4

7

2

19

12

3

6

5

7

6

1

2

1

GH45

2

2

1

0

2

2

2

2

1

1

1

1

2

1

1

1

1

0

0

0

GH51

3

2

2

1

2

2

1

2

3

0

2

3

2

3

2

4

4

1

1

4

GH53

1

6

1

1

1

1

1

1

2

0

1

2

1

1

1

1

2

1

1

1

GH54

0

0

0

0

0

0

0

0

2

0

0

0

0

0

0

0

0

0

0

0

GH62

0

0

0

0

0

0

0

0

0

0

1

0

0

0

0

0

0

0

0

0

GH74

1

1

1

4

1

1

1

4

2

1

1

2

1

0

0

0

1

0

1

0

GH78

4

1

5

2

5

4

2

1

7

1

3

3

3

2

0

3

2

3

2

3

GH88

2

1

1

2

1

1

1

1

1

2

1

1

1

1

1

1

1

1

1

1

GH93

1

0

1

0

2

2

0

0

1

0

2

1

0

1

0

0

0

0

0

0

GH95

1

1

1

2

1

2

1

1

1

1

2

1

1

1

0

1

1

1

1

1

GH105

3

0

1

1

1

1

2

0

2

0

2

2

1

0

0

2

2

0

0

0

GH115

2

2

2

3

4

3

1

1

1

2

2

2

2

2

2

1

2

1

1

2

GH131

2

1

3

2

3

3

2

3

2

3

2

3

3

2

1

1

1

0

2

0

Total GH

186

89

110

106

133

127

101

100

129

71

116

151

114

118

90

100

100

67

80

81

PL1

2

0

0

2

0

0

2

0

4

0

5

4

0

0

0

0

0

0

0

0

PL3

1

0

0

0

0

0

0

0

0

0

4

0

0

0

0

0

0

0

0

0

PL4

1

0

1

0

0

0

1

0

3

1

3

3

1

0

0

0

2

0

0

0

PL9

0

0

0

0

0

0

0

0

0

0

1

0

0

0

0

0

0

0

0

0

Total PL

4

0

1

2

0

0

3

0

7

1

13

7

1

0

0

0

2

0

0

0

CE1

4

2

0

0

2

2

1

4

2

3

11

1

3

0

0

0

1

0

0

0

CE8

2

2

3

3

3

3

3

2

6

1

2

5

2

2

3

2

2

2

2

1

CE12

2

0

2

2

1

1

2

0

1

0

2

3

0

0

0

0

0

0

0

0

Total CE

8

4

5

5

6

6

6

6

9

4

15

9

5

2

3

2

3

2

2

1

CBM1

43

17

17

6

14

18

17

30

21

17

5

17

23

2

1

0

1

0

8

0

CBM5

8

3

5

5

10

9

5

3

4

3

3

10

6

11

1

4

4

5

5

4

CBM12

2

1

1

0

1

1

1

0

0

1

1

1

1

1

0

1

1

1

1

1

CBM13

4

6

11

4

9

8

1

5

7

4

17

4

6

6

2

11

1

15

5

5

CBM18

1

1

1

0

2

1

1

1

1

1

1

1

1

1

1

1

0

1

1

1

CBM20

4

4

2

2

3

3

3

2

4

1

1

5

4

2

1

2

2

1

2

1

CBM21

3

2

2

2

2

2

2

2

3

2

3

1

2

2

3

2

2

2

1

1

CBM35

2

0

1

1

0

1

2

1

1

0

1

2

1

0

1

1

2

1

2

1

CBM38

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

0

0

0

0

0

CBM42

4

0

0

0

0

0

0

0

2

0

0

0

0

0

0

0

0

0

0

0

CBM43

1

1

1

1

1

1

1

1

1

1

1

2

1

1

1

1

1

2

1

1

CBM48

3

2

3

3

3

3

2

1

3

2

4

3

3

3

2

3

3

3

2

3

CBM50

21

1

2

2

8

10

1

1

10

1

5

1

1

1

1

15

2

4

1

0

CBM63

0

0

0

0

0

0

0

0

0

0

1

0

0

0

0

0

0

0

0

0

Total CBM

96

38

46

26

53

57

36

47

57

33

43

47

49

31

14

41

19

35

29

18

AA1_1

0

7

11

10

13

16

14

0

12

5

2

15

7

6

0

5

4

2

4

3

AA1_2

1

1

1

1

1

1

1

1

1

1

0

2

2

1

2

1

1

1

1

1

AA1_3

5

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

AA2

18

16

12

17

8

9

7

16

11

9

0

6

26

0

0

0

0

0

0

0

AA3_1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

0

0

1

0

2

0

AA3_2b

3

6

11

2

4

8

13

3

6

4

2

15

5

0

0

1

6

3

0

0

AA3_3

6

3

4

3

3

5

3

3

4

2

4

7

4

5

1

4

2

4

5

5

AA3_4

3

0

0

0

0

0

0

1

1

2

0

0

1

0

0

0

1

0

0

0

AA4

0

0

0

0

0

0

0

0

0

0

0

0

0

0

2

0

3

0

0

0

AA5_1

8

3

9

4

9

9

5

7

9

7

2

8

9

6

3

4

2

2

3

4

AA5_2

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

AA6

4

0

1

3

1

2

2

4

2

1

4

1

1

2

1

1

3

1

2

1

AA7

2

0

4

0

4

4

3

0

1

0

4

3

0

0

3

5

0

0

0

0

AA8

2

2

2

1

2

2

2

2

1

2

3

2

2

4

0

0

0

0

4

0

AA9

20

9

15

13

15

16

10

15

14

15

22

16

18

10

0

4

4

2

5

2

AA11

0

0

0

0

0

0

0

0

0

0

2

0

0

0

0

0

0

0

0

0

Total AA

73

48

71

55

61

73

61

53

63

49

46

76

76

35

12

25

27

15

26

16

  1. aSelection of the CAZy families involved in plant cell wall degradation. Full list of CAZy families are provided in Additional file 1: Table S1.
  2. bAA3_2 includes only models with similarity to aryl-alcohol oxidase and glucose oxidase
  3. Species list : Auricularia delicata (Aude); Ceriporiopsis subvermispora (Cesu); Dichomitus squalens (Disq); Fomitiporia mediterranea (Fome); Ganoderma lucidum (Galu); Ganoderma sp. (Gano); Heterobasidion annosum (Hean); Phanerochaete chrysosporium (Phch); Punctularia strigosozonata (Pust); Pycnoporus cinnabarinus (Pyci); Schizophyllum commune (Scco); Stereum hirsutum (Sthi); Trametes versicolor (Trve); Coniophora puteana (Copu); Dacryopinax sp. (Dac); Fomitopsis pinicola (Fopi); Gloeophyllum trabeum (Gltr); Postia placenta (Popl); Serpula lacrymans (Sela); Wolfiporia cocos (Woco).
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BMC Genomics

ISSN: 1471-2164

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