Analyses of Catharanthus roseus and Arabidopsis thaliana WRKY transcription factors reveal involvement in jasmonate signaling

Table 1 The Arabidopsis WRKY transcription factors differentially expressed in response to jasmonate treatment in five experiments before and after the application of the Benjamini-Hochberg false discovery rate

			Genes after Two-Way ANOVA (P = 0.05)			Genes after Two-Way ANOVA (P = 0.05) and B-H FDR
Dataset	Source	Samples used	No. genes	No. WRKY genes	WRKYs	No. genes	No. WRKY genes	WRKYs
E-ATMX-13	EMBL	MeJA treated timecourse (0.5, 2, and 6 hr) in cell suspension cultures	2819	11	WRKY6, WRKY9, WRKY15, WRKY18, WRKY25, WRKY26, WRKY39, WRKY40, WRKY47, WRKY54, WRKY69	116	none	none
E-GEOD-28600	EMBL	JA and JA + ABA treated (3 and 24 hr) T87 cell cultures	5279	21	WRKY1, WRKY6, WRKY7, WRKY16, WRKY21, WRKY35, WRKY36, WRKY38, WRKY40, WRKY43, WRKY45, WRKY47, WRKY52, WRKY53, WRKY54, WRKY67, WRKY69, WRKY70, WRKY71, WRKY72, WRKY75	533	3	WRKY7, WRKY38, WRKY70
E-MEXP-883	EMBL	MeJA treated (6 hr) WT and myc2 plants	3348	14	WRKY6, WRKY7, WRKY11, WRKY18, WRKY20, WRKY23, WRKY26, WRKY33, WRKY39, WRKY40, WRKY45, WRKY47, WRKY69, WRKY75	568	4	WRKY26, WRKY33, WRKY40, WRKY45
GSE21762	NCBI	JA treated WT and coi1 seedlings	3743	16	WRKY3, WRKY7, WRKY17, WRKY22, WRKY25, WRKY31, WRKY40, WRKY46, WRKY47, WRKY52, WRKY53, WRKY60, WRKY70, WRKY72, WRKY74, WRKY75	175	1	WRKY72
ME00337	TIAR	MeJA treated (0.5, 1, 3 hr) time course on WT seedlings	4796	15	WRKY3, WRKY7, WRKY18, WRKY20, WRKY21, WRKY23, WRKY38, WRKY40, WRKY45, WRKY47, WRKY48, WRKY53, WRKY60, WRKY69, WRKY75	950	6	WRKY7, WRKY18, WRKY20, WRKY40, WRKY45, WRKY48

Analysis was performed using a two-way ANOVA. Only WRKY genes responsive to jasmonate treatment are presented.

ISSN: 1471-2164