Category | Subcategory | Dd3937 | WPP14 | Reference |
---|---|---|---|---|
Sequence homology | Subtotal | 297 | 297 | Â |
 | Gamma strains | 239 | 239 | Additional file 2a |
 | Non-gamma strains | 58 | 58 | Additional file 2b |
Phenotypes of interest | Subtotal | 194 | 194 | Â |
 | Taxonomy Statistics | 76 | 76 | Additional file 2c, d |
 | Lifestyle Statistics | 118 | 118 | Additional file 2c, d |
Gene characteristics | Subtotal | 23 | 21 | Â |
 | GC content | 1 | 1 | This study |
 | subcellular localization | 1 | 1 | |
 | phylogenetic profile | 6 | 6 | |
 | fingerprints scanning | 3 | 3 | |
 | codon adaptation index (CAI) | 3 | 3 | |
 | physical adjacency (gene neighbor) | 2 | 2 | |
 | Operon prediction | 1 | 1 | |
 | phylogenetic conservation | 1 | 1 | This study |
 | COG functional category | 1 | 1 | [52] |
 | Genomic island | 4 | 1 | |
 | computed structural and physicochemical features of proteins and peptides | 40 | 66 | |
Functional genomics | Subtotal | 52 | 3 | Â |
 | binding site prediction | 32 | 0 | Additional file 3b |
 | Gene expression | 14 | 3 | Additional file 3a |
 | proteomics | 6 | 0 | Additional file 3a |
 | Total | 606 | 581 |  |