Table 5 Top 50 predicted host-microbe interaction factors from Dickeya dadantii 3937

ABF-0018715

0.922

virB8

Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB8)

ABF-0020188

0.922

Predicted cell-wall-anchored protein SasA (LPXTG motif) this is up-regulated by hrpY; we have a mutation in this gene.

ABF-0019950

0.922

Putative multicopper oxidase

ABF-0019360

0.922

hypothetical protein

ABF-0019151

0.922

chrysobactin synthetase cbsF

ABF-0019124

0.922

Biopolymer transport protein ExbD/TolR

ABF-0019122

0.922

MotA/TolQ/ExbB proton channel family protein

ABF-0019117

0.922

sftP

TonB-dependent receptor

ABF-0019116

0.922

hypothetical protein

ABF-0018783

0.922

putative transmembrane protein

ABF-0018775

0.922

Holin

ABF-0018724

0.922

putative ATP/GTP-binding protein remnant

ABF-0018722

0.922

virB2

Major pilus subunit of type IV secretion complex (VirB2)

ABF-0047137

0.922

hypothetical protein

ABF-0018717

0.922

virB6

Integral inner membrane protein of type IV secretion complex (VirB6)

ABF-0018716

0.922

virB7

TriF protein

ABF-0018713

0.922

virB10

Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10)

ABF-0018712

0.922

virB11

ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB11)

ABF-0018601

0.922

hypothetical protein

ABF-0018207

0.922

hypothetical protein

ABF-0018199

0.922

ganC

putative truncated PTS system EIIBC component

ABF-0017777

0.922

hecA2

Putative member of ShlA/HecA/FhaA exoprotein family

ABF-0015606

0.922

ABC transporter permease protein

ABF-0015604

0.922

Amino acid ABC transporter, periplasmic amino acid-binding protein

ABF-0015543

0.922

hypothetical protein 15544 is up-regulated by hrpY. Is 15543 in the same operon? We have a mutation in 15544

ABF-0015387

0.922

nipE

necrosis-inducing protein

ABF-0014838

0.922

putative exported protein

ABF-0014623

0.922

Type IV pilus biogenesis protein PilN

ABF-0018720

0.922

virB4

ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4)

ABF-0018714

0.922

virB9

VirB9

ABF-0047204

0.922

hypothetical protein

ABF-0015913

0.921

ppdA

Prepilin peptidase dependent protein A

ABF-0017252

0.921

Conjugative transfer protein TrbG

ABF-0018195

0.921

ganG

galactan ABC transport system, permease component

ABF-0016407

0.921

hypothetical protein

ABF-0018205

0.921

Pirin

ABF-0019418

0.921

Cellulose 1, 4-beta-cellobiosidase precursor

ABF-0019468

0.921

hypothetical protein

ABF-0019566

0.921

hypothetical protein

ABF-0016680

0.921

Iron utilization protein

ABF-0020727

0.921

sttG

General secretion pathway protein G

ABF-0019115

0.921

hypothetical protein

ABF-0015381

0.921

avrM

Avirulence protein

ABF-0018723

0.921

virB1

VirB1

ABF-0015598

0.921

hypothetical protein

ABF-0015609

0.921

Branched-chain amino acid aminotransferase

ABF-0018193

0.921

ganF

galactan ABC transport system, permease component

ABF-0017097

0.921

Methyl-accepting chemotaxis protein

ABF-0020433

0.921

hypothetical protein

ABF-0019153

0.921

cbsH

chrysobactin oligopeptidase CbsH