| Infinium I | Infinium II | Total kept |
---|---|---|---|
Total number of probes on array | 135,476 | 350,036 | - |
Probes which map to multiple genomic locations | 1,581 | 3,728 | 0 |
Probes containing known repeat regions | 2,845 | 13,673 | 0 |
Probes containing known INDELs | 1,885 | 4,101 | 5,986 |
Probes containing SNP and interrogated CpG | 9,568 | 42,800 | 0 |
Probes containing 1 SNP in the body | 26,700 | 72,315 | 77,545* |
Probes containing > =2 SNPs in the body | 20,043 | 34,330 | 34,675* |
Probes affected by unknown factors | 1,394 | 13,840 | 0 |
Probes affected by multiple factors | 16,857 | 49,580 | 4,047* |
Total number of ‘rescued probes’ | 7,367 | 114,886 | 122,253 |
Total number of high-quality probes | 52,817 | 119,770 | 172,587 |
Total number of probes kept for further analysis | 60,184 | 234,656 | 294,840 |