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Table 3 KEGG pathway analyses of the predicted target genes of the validated most differentially expressed microRNAs with P < 0.05

From: Supplemental carnitine affects the microRNA expression profile in skeletal muscle of obese Zucker rats

Pathway

P-value

Genes

Putative targets of the up-regulated miRNAs

  Athways in cancer

0.044

WNT5A, TCF7, FGFR3, RALBP1, VHL, TGFBR1, IGF1, CTNNA1, STK4, ITGB1, IGF1R, CBLB, CCND1, HIF1A, CDKN1B, JUN, SOS2, HHIP, WNT9A, PIAS1

  Wnt signalling pathway

0.012

WNT5A, TBL1XR1, TCF7, ROCK2, PPP2R5D, DKK2, CCND1, SIAH1A, JUN, CAMK2B, WNT9A, PPP3CA, FBXW11

  Ubiquitin mediated proteolysis

0.011

CUL3, UBE2N, UBE2A, CBLB, UBE3A, VHL, UBE2K, SIAH1A, UBE2I, HERC2, PIAS1, FBXW11

  Leukocyte transendothelial migration

0.037

GNAI2, ACTN4, ROCK2, CXCR4, RAP1A, RAPGEF4, CTNNA1, ITGB1, CLDN23, PTPN11

  Adherens junction

0.026

IGF1R, PVRL4, TCF7, TJP1, ACTN4, TGFBR1, CTNNA1, SNAI1

  Longterm depression

0.048

IGF1R, GNAI2, PLA2G12A, GRID2, IGF1, PRKG2, ITPR2

  Ether lipid metabolism

0.044

PLA2G12A, PLA2G7, PAFAH1B1, PPAP2A, PPAP2B

Putative targets of the down-regulated miRNAs

  Ubiquitin mediated proteolysis

0.003

CUL3, UBE2N, UBE3A, VHL, RHOBTB2, BIRC6, UBA6, UBE2I, SMURF2, UBE2D1, CUL1

  Leukocyte transendothelial migration

0.017

CLDN8, ITK, CLDN19, PIK3CA, RAPGEF4, CLDN11, ITGB1, MLLT4, PRKCB

  T cell receptor signalling pathway

0.036

ITK, JUN, PIK3CA, CHP, DDAH1, NFATC3, LCP2, IL2

  Long-term depression

0.042

GNAO1, IGF1, GUCY1B3, GRM1, ITPR1, PRKCB