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Table 2 Most frequently occurring cis -eGenes across all datasets

From: Synthesis of 53 tissue and cell line expression QTL datasets reveals master eQTLs

eGene

Datasets

Best eQTL, [#datasets], fxn*

Lowest P†

CEU MAF

GTeX results‡

Most common eQTL, [#datasets], fxn*

CHURC1

43

rs10144942, [1]

1E-322

0.175

Y (9/9)

rs7143432, [29], 1.9 kb upstream

PEX6

43

rs2274517, [5], intron

1E-322

0.450

Y (9/9)

rs2395943, [26], intron

PPIL3

43

rs10167387, [2], intron

1.87E-292

0.225

Y (9/9)

rs7606251, [16], intron

GSTM3

42

rs10735234, [12]

1.10E-156

0.458

Y (9/9)

rs11101992, [13]

MRPL43

42

rs2863095, [25]

7.20E-120

0.208

Y (3/9)

<best eSNP, [25]

GSTT1

40

rs5760176, [1]

2.6E-317

0.375

Y (9/9)

rs4822458, [17]

WDR41

39

rs335628, [6], intron

1E-322

0.158

Y (5/9)

rs441102, [27], intron

AMFR

39

rs4924, [11], 3′UTR

9.80E-198

0.467

Y (3/9)

rs2440468, [12], intron

ZNF266

39

rs6512121, [14], intron

2.90E-183

0.483

Y (9/9)

<best eSNP, [14], intron

HMBOX1

39

rs8180944, [21], intron

1.53E-75

0.275

N (0/9)

<best eSNP, [21], intron

DNAJC15

38

rs17553846, [3], intron

6.11E-181

0.233

Y (9/9)

rs11617079, [19], nSNP

MTRR

38

rs3776455, [2], intron

2.60E-170

0.375

Y (2/9)

rs162036, [19], nSNP

WDR48

38

rs1274958, [3], nSNP

4.50E-142

0.258

Y (2/9)

rs12636980, [19], intron

MYOM2

38

rs9314455, [1]

8.40E-127

0.392

Y (6/9)

rs12681998, [9], intron

CDK5RAP2

37

rs3780674, [10], introna

2.10E-172

0.092

N (0/9)

rs10125592, [18], introna

ABHD12

37

rs2482911, [9], intronb

1.16E-104

0.417

Y (4/9)

<best eSNP, [9], intronb

RABEP1

37

rs11078559, [14], intron

4.01E-103

0.417

Y (4/9)

<best eSNP, [14], intron

NUDT2

36

rs10972063, [2], splice site

3.69E-182

0.108

Y (9/9)

rs10971957, [13]

ACP6

36

rs12119079, [12], intron

1.76E-84

0.325

Y (7/9)

<best eSNP, [12], intron

ARNT

36

rs11204726, [9]

2.80E-64

0.375

Y (3/9)

rs7412746, [13]

AKAP10

35

rs203462, [6], nSNPc

1.70E-132

0.408

Y (2/9)

rs397969, [8], 3.5 kb downstreamc

TPCN2

35

rs4930265, [3], 3UTRd

5.50E-127

0.275

Y (3/9)

rs3750965, [16], nSNPd

TRAPPC4

35

rs11006, [11], 3UTR

1.10E-123

0.275

Y (9/9)

rs4938621, [16], intron

ITGB3BP

35

rs6697508, [15], intron

1.27E-114

0.283

Y (9/9)

<best eSNP, [15], intron

QRSL1

35

rs3101493, [22], 3UTR

7.90E-109

0.425

Y (8/9)

<best eSNP, [22], 3′UTR

CAMKK2

35

rs11065504, [7], intron

2.40E-107

0.300

Y (4/9)

rs3794207, [24], intron

NDUFS5

35

rs3768324, [8], intron

5.28E-48

0.375

Y (8/9)

rs10888650, [16]

TIMM10

34

rs2649667, [1], intron

5E-324

0.233

Y (8/9)

rs2848630, [18]

STAT6

34

rs324019, [4], intron

6.87E-198

0.392

Y (1/9)

rs841718, [24], intron

CARD8

34

rs1062808, [25], 3UTR

9.80E-198

0.292

Y (3/9)

<best eSNP, [25], 3′UTR

NQO2

34

rs1028612, [1]

6.12E-156

0.225

Y (9/9)

rs2071002, [16], nSNP

THEM4

34

rs13320, [25], 3UTRe

2.60E-93

0.383

Y (3/9)

<best eSNP, [25], 3′UTRe

IRF5

33

rs2172876, [1], intronf

1E-322

0.383

Y (3/9)

rs6965542, [12], intronf

  1. *fxn = functional annotation of SNP; if no function is listed the SNP is intergenic. †lowest eSNP p-value across all datasets where an eGene was reported. Results from the GRASP GWAS database for SNPs or those in perfect LD (r2 = 1): abone mineral density (P < 7E-7), balkaline phosphatase (P < 7E-10), cplatelet count (P < 2E-9), dhair color (P < 3E-11), emelanoma (P < 9E-11), fanti-dsDNA in systemic lupus erythematosus (P < 2E-6). ‡GTeX (Genotype Tissue Expression Resource) results were queried for 9 tissues on August 6, 2013. Tissues queried included: adipose (subcutaneous), artery (tibial), blood, heart (left ventricle), lung, muscle (skeletal), nerve (tibial), skin (sun exposed), and thyroid.