From: Synthesis of 53 tissue and cell line expression QTL datasets reveals master eQTLs
eGene | Datasets | Best eQTL, [#datasets], fxn* | Lowest P†| CEU MAF | GTeX results‡ | Most common eQTL, [#datasets], fxn* |
---|---|---|---|---|---|---|
CHURC1 | 43 | rs10144942, [1] | 1E-322 | 0.175 | Y (9/9) | rs7143432, [29], 1.9Â kb upstream |
PEX6 | 43 | rs2274517, [5], intron | 1E-322 | 0.450 | Y (9/9) | rs2395943, [26], intron |
PPIL3 | 43 | rs10167387, [2], intron | 1.87E-292 | 0.225 | Y (9/9) | rs7606251, [16], intron |
GSTM3 | 42 | rs10735234, [12] | 1.10E-156 | 0.458 | Y (9/9) | rs11101992, [13] |
MRPL43 | 42 | rs2863095, [25] | 7.20E-120 | 0.208 | Y (3/9) | <best eSNP, [25] |
GSTT1 | 40 | rs5760176, [1] | 2.6E-317 | 0.375 | Y (9/9) | rs4822458, [17] |
WDR41 | 39 | rs335628, [6], intron | 1E-322 | 0.158 | Y (5/9) | rs441102, [27], intron |
AMFR | 39 | rs4924, [11], 3′UTR | 9.80E-198 | 0.467 | Y (3/9) | rs2440468, [12], intron |
ZNF266 | 39 | rs6512121, [14], intron | 2.90E-183 | 0.483 | Y (9/9) | <best eSNP, [14], intron |
HMBOX1 | 39 | rs8180944, [21], intron | 1.53E-75 | 0.275 | N (0/9) | <best eSNP, [21], intron |
DNAJC15 | 38 | rs17553846, [3], intron | 6.11E-181 | 0.233 | Y (9/9) | rs11617079, [19], nSNP |
MTRR | 38 | rs3776455, [2], intron | 2.60E-170 | 0.375 | Y (2/9) | rs162036, [19], nSNP |
WDR48 | 38 | rs1274958, [3], nSNP | 4.50E-142 | 0.258 | Y (2/9) | rs12636980, [19], intron |
MYOM2 | 38 | rs9314455, [1] | 8.40E-127 | 0.392 | Y (6/9) | rs12681998, [9], intron |
CDK5RAP2 | 37 | rs3780674, [10], introna | 2.10E-172 | 0.092 | N (0/9) | rs10125592, [18], introna |
ABHD12 | 37 | rs2482911, [9], intronb | 1.16E-104 | 0.417 | Y (4/9) | <best eSNP, [9], intronb |
RABEP1 | 37 | rs11078559, [14], intron | 4.01E-103 | 0.417 | Y (4/9) | <best eSNP, [14], intron |
NUDT2 | 36 | rs10972063, [2], splice site | 3.69E-182 | 0.108 | Y (9/9) | rs10971957, [13] |
ACP6 | 36 | rs12119079, [12], intron | 1.76E-84 | 0.325 | Y (7/9) | <best eSNP, [12], intron |
ARNT | 36 | rs11204726, [9] | 2.80E-64 | 0.375 | Y (3/9) | rs7412746, [13] |
AKAP10 | 35 | rs203462, [6], nSNPc | 1.70E-132 | 0.408 | Y (2/9) | rs397969, [8], 3.5Â kb downstreamc |
TPCN2 | 35 | rs4930265, [3], 3UTRd | 5.50E-127 | 0.275 | Y (3/9) | rs3750965, [16], nSNPd |
TRAPPC4 | 35 | rs11006, [11], 3UTR | 1.10E-123 | 0.275 | Y (9/9) | rs4938621, [16], intron |
ITGB3BP | 35 | rs6697508, [15], intron | 1.27E-114 | 0.283 | Y (9/9) | <best eSNP, [15], intron |
QRSL1 | 35 | rs3101493, [22], 3UTR | 7.90E-109 | 0.425 | Y (8/9) | <best eSNP, [22], 3′UTR |
CAMKK2 | 35 | rs11065504, [7], intron | 2.40E-107 | 0.300 | Y (4/9) | rs3794207, [24], intron |
NDUFS5 | 35 | rs3768324, [8], intron | 5.28E-48 | 0.375 | Y (8/9) | rs10888650, [16] |
TIMM10 | 34 | rs2649667, [1], intron | 5E-324 | 0.233 | Y (8/9) | rs2848630, [18] |
STAT6 | 34 | rs324019, [4], intron | 6.87E-198 | 0.392 | Y (1/9) | rs841718, [24], intron |
CARD8 | 34 | rs1062808, [25], 3UTR | 9.80E-198 | 0.292 | Y (3/9) | <best eSNP, [25], 3′UTR |
NQO2 | 34 | rs1028612, [1] | 6.12E-156 | 0.225 | Y (9/9) | rs2071002, [16], nSNP |
THEM4 | 34 | rs13320, [25], 3UTRe | 2.60E-93 | 0.383 | Y (3/9) | <best eSNP, [25], 3′UTRe |
IRF5 | 33 | rs2172876, [1], intronf | 1E-322 | 0.383 | Y (3/9) | rs6965542, [12], intronf |