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Table 1 Summary of BAC library screen

From: Intergenomic single nucleotide polymorphisms as a tool for bacterial artificial chromosome contig building of homoeologous Brassica napus regions

SNP assay

No of BACs

Assay nucleotide 1

Assay nucleotide 2

  

Identity

No of BACs

Identity

No of BACs

#386-17c

95

C

87

G

8

#386-17a

60

T

51

C

9

#386-14d

2

A

0

G

2

#386-14c

129

A

126

G

3

#386-13

110

A

108

G

2

#386-8

406

C

400

T

6

#637-3

215

T

209

G

6

#637-5

243

C

233

A

10

#637-8a

402

T

336

C

66

#637-8b

214

C

172

T

42

#637-11

538

G

427

A

111

#11428

194

A

142

T

52

#11426

236

A

145

G

91

#11424

3124

T

3124

A

0

#11411

102

T

79

G

23

#11410

80

A

67

T

13

#11406

66

A

58

G

8

#11405

68

G

54

T

14

#11396

22

C

22

G

0

#11395

16

G

11

A

5

#11392a

7

T

7

C

0

#11392b

20

A

10

C

10

#11385-b

21

G

10

A

11

#11385-c

27

G

11

T

16

#11382a

67

T

31

C

36

#11382b

68

G

36

C

32

#11376

406

A

44

T

362

#11372

607

A

607

C

0

#11356

60

A

2

G

58

#11355

182

A

98

G

84

#11354

432

T

82

G

350

#479-18

143

G

65

C

79

#479-13d

60

G

51

A

9

#479-13b

60

A

52

G

8

#479-12b

125

G

121

T

4

#479-12a

123

T

118

C

5

#479-9

152

A

152

G

0

#479-3

286

A

278

G

8

#BolI-5

301

T

297

C

4

#BolI-3

298

C

298

T

0

#11308

377

T

201

C

177

#11307

209

C

118

T

91

#11303

0

G

0

A

0

#11301

1

T

0

C

1

#217-1

117

A

19

G

98

#217-5

741

A

741

G

0

#217-6a

31

C

17

A

14

#217-6b

498

G

488

T

10

#217-7

127

C

74

G

53

#217-9

96

G

64

A

32

#578-5

95

A

63

G

32

#578-6

128

A

105

C

23