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Table 1 Average nucleotide identity (ANI) and conservation in percent between R. etli sv. mimosae Mim1 and R. etli sv. phaseoli CFN 42 or R. leguminosarum 3841 replicons

From: Genomic basis of symbiovar mimosae in Rhizobium etli

Mim1 replicons

ANI*/conservation§to the corresponding replicons in

R. etliCFN42

R. leguminosarum3841

pRetMim1f

97.4/51.1 (pReCFN42f)

86.8/31.4 (pRL12)

pRetMim1e (pSym)

89.2/8.8 (ReCFN42d)

 

pRetMim1d

98.9/97.5 (pReCFN42e)

88.2/61.2 (pRL11)

pRetMim1c

86.4/11.4 (pReCFN42a)

 

pRetMim1b

99.1/92.5 (pReCFN42c)

87.2/55.7 (pRL10)

pRetMim1a

99.2/99.9 (pReCFN42b)

87.6/58.4 (pRL9)

RetMim1Ch

99.2/97.8 (ReCFN42Ch)

88.1/78.1 (RLChr)

  1. *Average nucleotide identity was calculated using all portions of the replicons that could be aligned with the nucmer program. These regions included both genic and intergenic regions.
  2. §Percentage of the Mim1 replicon involved in the ANI calculation is expressed here as the conservation value.
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BMC Genomics

ISSN: 1471-2164

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