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Table 3 Comparing DEFA1A3 haplotype class with copy number in 1000 Genome individuals

From: Inferring mechanisms of copy number change from haplotype structures at the human DEFA1A3 locus

Haplotype class

Africa

America

Asia

Europe

Reference Sequence

NS

3×10-4; high

0.009; high

2×10-26; high

Class 1

NS

NS

9×10-16; high

NS

Class 2

NS

1×10-6; low

1×10-8; low

1×10-18; low

Exchange 1

-

0.003; high

-

NS

Exchange 2

NS

NS

0.045; low

3×10-4; low

  1. p-values and direction of significant associations obtained for Chi Square or Cochran-Armitage tests (Additional file 1: Table S3) comparing DEFA1A3 haplotype class with DEFA1A3 copy number, based on the 1000 Genomes samples. All p-values were adjusted for multiple testing using Bonferroni correction. NS = not significant. - = no test performed (see Additional file 1: Table S3). High = associated with a high DEFA1A3 copy number; Low = associated with a low DEFA1A3 copy number.
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BMC Genomics

ISSN: 1471-2164

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