Table 2 Genome-wide analysis of C. lunata CX-3 gene sets
Characteristics | CX-3 | CCC corea | CX-3-m118 specificb | CX-3-C5 specificc | CX-3 specific |
|---|---|---|---|---|---|
Protein-encoding genes | 11234 | 10082 | 293 | 332 | 527 |
Protein families | 2830 | 2780 | 71 | 66 | 48 |
Secreted proteins | 840 | 736 | 41 | 23 | 40 |
PHI genesd | 1904 | 1880 | 2 | 10 | 12 |
Transposases | 161 | 78 | 5 | 34 | 44 |
Proteases | 516 | 502 | 5 | 4 | 5 |
Glycoside hydrolases | 219 | 216 | 0 | 1 | 2 |
MFS transporters | 252 | 252 | 0 | 0 | 0 |
ABC transporters | 47 | 47 | 0 | 0 | 0 |
P450s | 147 | 147 | 0 | 0 | 0 |
GPCRs | 129 | 128 | 1 | 0 | 0 |
Pth11-like GPCRs | 37 | 0 | 0 | 0 | 0 |
Protein kinases | 153 | 153 | 0 | 0 | 0 |
Fungal specific transcription factors | 222 | 209 | 9 | 2 | 2 |
Backbone genes for secondary metabolism | 34 | 34 | 0 | 0 | 0 |
Orthologs in C. lunata m118 | 10375 | 10082 | 293 | NA | NA |
Orthologs in B. maydis C5 | 10414 | 10082 | NA | 332 | NA |
Orthologs in S. turcica | 10268 | 9833 | 125 | 238 | 72 |
Orthologs in P. tritici-repentis | 9979 | 9656 | 111 | 144 | 68 |
Orthologs in M. oryzae | 8462 | 8320 | 56 | 62 | 24 |
Identity to C. lunata m118 orthologs | 85.9% | 86.4% | 68.8% | NA | NA |
Identity to B. maydis C5 orthologs | 78.6% | 79.1% | NA | 64.2% | NA |
Identity to S. turcica orthologs | 75.8% | 76.5% | 53.3% | 62.7% | 57.2% |
Identity to P. tritici-repentis orthologs | 70.9% | 71.6% | 50.4% | 52.8% | 47.0% |
Identity to M. oryzae orthologs | 47.9% | 48.0% | 38.4% | 39.3% | 36.9% |