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Table 5 cis-NAT pairs that generate siRNAs in Cassava and castor bean

From: Endogenous small-noncoding RNAs and their roles in chilling response and stress acclimation in Cassava

      

+ Strand

 

- Strand

ID

Scaffold

Type

Start

End

# Reads in OLa

21 nt%b

# Reads in OLa

21 nt%b

Cassava

        

cis-NAT-1

scaffold07238

3′-3′

376957

377910

40

85.0%

175

66.3%

cis-NAT-2

scaffold11378

3′-3′

285315

286689

53

57.2%

10

60.0%

cis-NAT-3

scaffold08316

3′-3′

598264

598958

33

60.6%

7

100.0%

cis-NAT-4

scaffold12317

3′-3′

   65657

   66262

26

65.4%

6

83.3%

cis-NAT-5

scaffold03802

3′-3′

435292

436201

4

100.0%

24

54.2%

cis-NAT-6

scaffold11581

3′-3′

786965

787920

7

85.7%

15

53.3%

cis-NAT-7

scaffold06688

3′-3′

321683

322092

8

87.5%

7

85.7%

Castor bean

       

cis-NAT-8

29701

5′-5′

185445

186292

112

94.6%

152

94.7%

  1. aOL stands for overlapping regions.
  2. bAbundance of 21-nt reads expressed as the percentage of the total reads.