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Table 3 Alignment comparison of de novo and genome-based assembly strategies for the Anopheles gambiae midgut transcriptome

From: In depth annotation of the Anopheles gambiae mosquito midgut transcriptome

 

Reference genes detected

Query

# Transcripts

AVG Length (BP)

Unique

Shared

De novo

67011

678

1009

6881

Genome Based

20273

2039

167

 
  1. Alignment comparison was done using BLAST with de novo contigs as the query and with genome-based assembly transcripts as the subject and vice versa.
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BMC Genomics

ISSN: 1471-2164

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