Table 2 Basic statistics of whole exome sequences generated by the Ion Proton sequencer
Samples | Total bases (GB) | Average depth | Average read length (bp) | Aligned bases (GB) | Aligned bases (%) | SNPs |
|---|---|---|---|---|---|---|
01_1 | 6.77 | 65.9 | 121 | 6.40 | 96 | 58037 |
01_2 | 8.37 | 85.1 | 127 | 7.90 | 95 | |
02 | 10.8 | 122 | 142 | 10.4 | 98 | 69667 |
03_1 | 8.24 | 78.5 | 144 | 8.00 | 97 | 67493 |
03_2 | 8.93 | 93.0 | 139 | 8.60 | 97 | |
04 | 11.2 | 126 | 149 | 10.8 | 97 | 53811 |
05 | 12.2 | 147 | 148 | 11.9 | 98 | 46923 |
06 | 9.25 | 94.5 | 149 | 9.00 | 98 | 52516 |
07 | 12.1 | 135 | 149 | 11.8 | 98 | 53993 |
08 | 10.7 | 103 | 138 | 10.3 | 96 | 52243 |
09 | 10.9 | 121 | 137 | 10.5 | 97 | 50166 |
10 | 11.6 | 136 | 142 | 11.3 | 97 | 50781 |
11 | 10.4 | 85.5 | 134 | 10.0 | 97 | 67810 |
12 | 11.3 | 133 | 146 | 10.9 | 97 | 54335 |
Mean | 10.2 | 109 | 140 | 9.84 | 97.0 | 56481.25 |
%CV | 15 | 23 | 5.9 | 16 | 0.87 | 12.94 |