Validation of multiple single nucleotide variation calls by additional exome analysis with a semiconductor sequencer to supplement data of whole-genome sequencing of a human population

Table 4 Average numbers of NGS SNP calls showing concordant or discordant with Omni 2.5-8

	Proton concordant & HiSeq discordant	HiSeq concordant & Proton discordant	All concordant	Both discordant
	Proton concordant & HiSeq discordant	HiSeq concordant & Proton discordant	All concordant	Total	HiSeq = Proton	All discordant
Average	64	1849	76945	216	202	14
%CV	19.6	55.6	1.24	4.23	5.51	31.6
Common	1	43	66472	80	67	1

ISSN: 1471-2164