Table 3 Representative pathway genes
Pathways | Representative genes | Transcript | S0_S6 | S0_S48 | R0_R6 | R0_R48 |
|---|---|---|---|---|---|---|
Ethylene | ACO | LOC_Os02g53180.1 | - | U | - | - |
| Â | ERF | LOC_Os02g43790.1 | - | U | - | - |
Jasmonate | LOX | LOC_Os08g39850.1 | - | U | - | - |
| Â | AOS2 | LOC_Os03g12500.1 | - | U | - | - |
| Â | OPR1 | LOC_Os06g11210.1 | - | U | - | - |
Salicylic acid | SAMT | LOC_Os11g15040.1 | U | U | - | U |
Receptor kinase | Receptor-like protein kinase 5 | LOC_Os02g13510.1 | - | U | - | U |
| Â | BAK1 | LOC_Os03g32580.1 | - | U | - | - |
| Â | XA21 | LOC_Os11g36180.1 | - | - | - | U |
MAP kinase | MAPK | LOC_Os03g17700.1 | - | U | - | - |
Ca2+ signaling | OsCML15 | LOC_Os05g31620.1 | - | U | - | - |
| Â | Calmodulin-binding protein | LOC_Os12g36910.1 | - | U | - | U |
Biotic stress | PR1a | LOC_Os07g03710.1 | - | U | - | - |
| Â | PR1b | LOC_Os01g28450.1 | - | U | - | U |
| Â | PR3 | LOC_Os03g30470.1 | - | U | - | - |
| Â | PR4b | LOC_Os11g37960.1 | - | U | - | - |
| Â | PR9 | LOC_Os07g48020.1 | - | U | - | U |
| Â | PR10 | LOC_Os12g36880.1 | - | U | U | U |
Wounding | WI12 | LOC_Os03g18770.1 | U | - | - | - |
TF | EREBP | LOC_Os03g08500.1 | - | U | - | - |
|  | Basic helix–loop–helix protein | LOC_Os09g31300.1 | - | U | - | U |
| Â | C2H2 zinc finger protein | LOC_Os05g37190.1 | - | U | - | U |
| Â | C3H zinc finger protein | LOC_Os07g38090.1 | - | - | - | - |
| Â | WRKY domain TF | LOC_Os01g14440.1 | - | U | - | - |
Pr. synthesis | tRNA synthetase | LOC_Os01g54020.2 | - | D | - | - |
| Â | 40S ribosomal protein | LOC_Os03g18570.1 | - | D | - | - |
| Â | 60S ribosomal protein | LOC_Os05g06310.1 | - | D | - | - |
| Â | Translation initiation factor | LOC_Os05g49970.2 | - | D | - | - |
Pr. targeting | Mitochondrial import translocase | LOC_Os02g48610.2 | - | D | - | - |
Pr. folding | Chaperonin | LOC_Os06g09679.1 | - | D | - | D |
Pr. degradation | Ubiquitin family protein | LOC_Os02g06640.1 | - | U | - | - |
| Â | OsFBL7 | LOC_Os02g10700.1 | U | U | - | - |
Pr. modification | Protein phosphatase | LOC_Os02g13100.1 | - | U | - | - |
| Â | Calcium-dependent protein kinases | LOC_Os07g05620.2 | - | U | - | U |
| Â | CRK5 | LOC_Os04g56430.1 | - | U | - | - |
| Â | CRK6 | LOC_Os03g16960.1 | - | U | - | - |
| Â | Serine/threonine protein kinase | LOC_Os02g01730.1 | - | U | - | - |
Trypsin inhibitor | BBTI5 | LOC_Os01g03360.1 | U | U | U | - |
Glucosidase | GNS1 | LOC_Os05g31140.1 | - | U | - | - |
| Â | GNS4 | LOC_Os01g71670.1 | - | U | - | U |
| Â | GNS5 | LOC_Os01g71340.1 | - | U | - | U |
PS light reaction | PS I reaction center subunit | LOC_Os03g56670.1 | - | D | - | - |
| Â | PS II reaction center protein | LOC_Os01g71190.1 | D | D | - | D |
| Â | ATP synthase | LOC_Os07g32880.1 | - | D | - | - |
PS Calvin cycle | Ribulose bisphosphate carboxylase | LOC_Os12g17600.1 | - | D | - | - |
Tetrapyrrole | Aminolevulinic acid dehydratase | LOC_Os06g49110.1 | - | D | - | - |
CHO synthesis | Starch synthase | LOC_Os04g53310.1 | D | - | D | - |
CHO degradation | β-amylase | LOC_Os03g22790.1 | U | U | U | - |
Lipid synthesis | Acetyl-CoA carboxylase | LOC_Os05g22940.1 | - | D | - | - |
| Â | Glycerol-3-phosphate acyltransferase | LOC_Os01g63580.1 | - | D | - | - |
TCA | Citrate synthase | LOC_Os01g19450.1 | - | D | - | - |