Skip to main content

Table 3 Target genes grouped into category I of novel miRNAs in orange

From: Genome-wide comparison of microRNAs and their targeted transcripts among leaf, flower and fruit of sweet orange

  

Category

 

Novel miRNA

Target gene

in leaves

in flowers

in fruit

Annotation

Csi-miRN02

Cs1g08400

I

N/A

N/A

Chaperonin CPN60-1

Csi-miRN02

Cs3g18790

I

II

I

Alkylated DNA repair protein alkB homolog 8

Csi-miRN02

Cs8g12570

I

N/A

N/A

LRR receptor-like serine/threonine-protein kinase EFR

Csi-miRN07

Cs8g09620

III

I

N/A

SRF-type transcription factor family protein

Csi-miRN11

Cs8g13560

I

III

I

No annotation

Csi-miRN20

Cs1g12230

N/A

N/A

I

Protein FAR1-RELATED SEQUENCE 6

Csi-miRN20

Cs3g05320

I

III

I

No annotation

Csi-miRN37

orange1.1 t02400

II

I

N/A

Indole-3-acetic acid-induced protein ARG7

  1. N/A means not available in the degradome data. Target transcripts were divided into three classes. In category I, the miRNA-guided cleavage fragment was the most abundant tag matching the transcript; In category II, the miRNA-guided cleavage fragment was not the most abundant fragment; however, it still formed a clear peak in the T-plot. The remaining target transcripts were classified into category III.