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Table 1 Results from creating SAP databases and using them for searching proteomic datasets

From: Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations

Sample

SAP database

Proteomic identifications

SAPs

SNP sites

SAP Peptide IDs*

SNPs ID’d

Jurkat human cells

9,168

6,924

522

491

B6 mouse islets

1

1

N/A

N/A

CAST mouse islets

476

249

22

19

  1. *peptide passing a 1% FDR.
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BMC Genomics

ISSN: 1471-2164

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