METHOD | HOL | JER | RDC | |||
---|---|---|---|---|---|---|
 | Mean | SD | Mean | SD | Mean | SD |
BEAGLE/BEAGLE pre-phasing (Single breed) | 0.87 | 0.32 | 0.82 | 0.38 | 0.76 | 0.39 |
BEAGLE/BEAGLE pre-phasing | 0.88 | 0.32 | 0.87 | 0.32 | 0.86 | 0.30 |
BEAGLE/SHAPEIT2 pre-phasing | 0.88 | 0.30 | 0.86 | 0.32 | 0.85 | 0.30 |
BEAGLE/Genotype probabilities | 0.90 | 0.27 | 0.89 | 0.28 | 0.87 | 0.27 |
IMPUTE2/BEAGLE pre-phasing | 0.90 | 0.20 | 0.85 | 0.23 | 0.86 | 0.20 |
IMPUTE2/SHAPEIT2 pre-phasing | 0.90 | 0.20 | 0.84 | 0.23 | 0.86 | 0.21 |
IMPUTE2/Genotype probabilities | 0.90 | 0.20 | 0.84 | 0.22 | 0.87 | 0.18 |