From: Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys
Characteristic | Before filtering | After filtering |
---|---|---|
Number of reads (both pools) | 366,689,206 | N/A |
Number of putative transcripts (both pools) | 194,729 | 13,211 |
Average transcript length (bp) | 1,005 | 2,026 |
Standard deviation (bp) | 1,474 | 1,592 |
Median transcript length (bp) | 439 | 1,649 |
Maximum transcript length (bp) | 27,655 | 24,046 |
Transcripts >1000 bp | 50,599 | 9,657 |
Transcripts with a Uniref100 hit (e-value < 1e-10) | 80,536 | 11,513 |
Transcripts matching unique Uniref100 proteins | 37,160 | 9,993 |
Transcripts with a NR hit (e-value < 1e-10) | 80,262 | 11,497 |
Transcripts matching unique NR proteins | 37,346 | 10,007 |
Number of Trinity components | 123,175 | 13,211 |
Number of ORFs | 89,684 | 13,210 |
Number of ORFs >450 bp | 61,569 | 11,141 |
Number of ORFs with a function assigned | 57,197 | 9,811 |