Table 5 Regulatory proteins and other non-structural proteins; gene product # and (pham #, specific to this analysis)
Function | Abouo | Davies | Jimmer1 and Jimmer2 | Emery | phiIBB_Pl23 |
|---|---|---|---|---|---|
LysM domain-containing protein (peptidoglycan binding) | gp22 (22) | gp22 (22) | gp25 (22) | gp17 (5623) | Â |
Cell wall hydrolase/late control D | gp23 (23) | gp23 (23) | gp26 (23) | Â | Â |
Subtilisin-like serine protease | Â | Â | gp42 (3042) | Â | Â |
Peptidoglycan hydrolase | gp36 (36) | gp36 (36) | gp38 (36) | gp31 (5634) | gp21 (351) |
Beta-lactamase | Â | Â | Â | Â | gp47 (5949) |
Holin | Â | Â | Â | Â | gp22 (5924) |
Phage-like element PBSX protein | gp26 (26), gp28 (28) | gp26 (26), gp28 (28) | gp28 (26), gp30 (28) | gp22 (5628) | Â |
bhlA/Bacteriocin | gp34 (34) | gp34 (34) | gp36 (34) | gp29 (34) | gp20 (5923) |
Membrane protein | gp35 (35), gp44 (44) | gp35 (35), gp44 and gp45 (44) | Â | gp34 (5637), gp53 and gp54 (44) | Â |
Antirepressor | gp41 (41), gp68 (71) | gp41 (41), gp72 (71) | gp19 (951), gp79 (71) | Â | gp39 (951) |
Tyrosine Recombinase XerC | gp43 (43) | gp43 (43) | Â | gp1 (5608), gp47 (43) | Â |
Accessory gene regulator B family protein | gp45 (45) | gp46 (45) | Â | gp55 (45) | Â |
AbrB family transcriptional regulator | Â | Â | Â | gp72 (2041) | Â |
RuvC Holliday junction resolvase | Â | Â | Â | Â | gp59 (5961) |
ArpU family transcriptional regulator | Â | Â | Â | Â | gp61 (2944) |
ABC transporter-like protein | gp74 (76) | gp77 (76) | gp84 (76) | Â | gp23 (5925) |
Arc-like DNA binding domain | gp52 (53) | gp54 (53) | gp62 and gp63 (53) | Â | Â |
Single-stranded DNA-binding protein | gp62 (65), gp63 (66) | gp66 (65), gp67 (66) | gp73 (65), gp74 (66) | Â | Â |
HNH endonuclease | gp64 (67) | gp68 (67) | gp75 (67) | Â | gp64A (5966) |
Serine recombinase | Â | Â | gp49 (3048) | Â | gp33 (3048) |
SOS-response repressor and protease LexA | Â | Â | Â | Â | gp31 (5934) |
Recombinational DNA repair protein RecT | Â | Â | Â | Â | gp49 (5948) |
Phage replication protein O | Â | Â | gp76 (3058) | Â | gp52 (5951) |
DNA replication protein | gp66 (69) | gp70 (69) | gp77 (3059) | gp99 (653) | gp50 (5952) |
YopX protein | gp71 (74) | gp75 (74) | gp82 (74) | Â | gp54 (5966) |
Toxin 1 | Â | Â | Â | Â | gp26 (5928) |
Recombinase recU | gp73 (75) | gp76 (75) | gp83 (75) | Â | Â |
dUTPase | gp76 (78) | gp79 (78) | gp86 (78) | Â | Â |
Site-specific DNA methylase | gp79 (3134) | gp81 (80) | gp88 (80) | gp33 (5636) | Â |
RNA polymerase sigma-70 factor | gp91 (90) | gp91 (90) | gp99 (90) | gp94 (5683) | Â |
DNA-dependent DNA polymerase family A | Â | Â | Â | gp81 (634) | Â |
Virulence-associated E family protein | Â | Â | Â | gp96 (651) | Â |
Stage V sporulation protein K | Â | Â | Â | gp95 (4849) | Â |
VRR-NUC domain-containing protein | Â | Â | Â | gp98 (652) | Â |
Transcriptional regulator (HTH, XRE) | gp49 (50), gp50 (51), gp51 (52), gp54 (57), gp56 (59) | gp51 (50), gp52 (51), gp53 (52), gp56 (55), gp57 (56), gp58 (57), gp60 (59) | gp52 and gp56 (50), gp57 (51), gp58 (52), gp67 (59), gp18 (3031), gp17 (3030), gp65 (3057), gp60 (3054), gp61 (3055) | gp60 (5656), gp89 (5678), gp40 (2605), gp65 (2691), gp64 (2692), gp48 (5649), gp59 (5655), gp49 (5650) | gp32 (5935), gp55 (5957) |