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Table 4 Transcription factors among beneficial fungi- induced genes

From: Deep sequencing–based comparative transcriptional profiles of Cymbidium hybridum roots in response to mycorrhizal and non-mycorrhizal beneficial fungi

TF family or domain

Induced

Repressed

Number of genes

AP2-ERF

Unigene627_All*, Unigene6402_All*, Unigene12197_All*⊕, Unigene103_All*, Unigene1545_All, Unigene10693_All, Unigene13239_All, Unigene13630_All

 

4* (4)

WRKY

Unigene2569_All ⊕ (WRKY19), Unigene13120_All*(WRKY40), Unigene8345_All*(WRKY5), Unigene8346_All*(WRKY5), Unigene3004_All*(WRKY39), Unigene4511_All*(WRKY43), Unigene1640_All(WRKY17)

Unigene1887_All (WRKY23)

5* (3)

Myb

Unigene10890_All*, Unigene13524_All*, Unigene14312_All*, Unigene2947_All

Unigene12533_All, Unigene16161_All*, Unigene1441_All*, Unigene14070_All*

6* (2)

bHLH

Unigene4212_All*, Unigene2945_All*, Unigene13683_All*, Unigene14108_All*

Unigene1570_All*, Unigene15208_All*, Unigene12890_All,

6* (1)

HOX

Unigene11426_All*, Unigene888_All,

Unigene9904_All, Unigene7407_All*, Unigene14238_All

2* (3)

NAC

Unigene14999_All*⊕, Unigene8664_All*, Unigene16437_All*, Unigene11336_All*

Unigene5046_All*

5*

ARF

Unigene10085_All (ARF9), Unigene9466_All (ARF9)

 

(2)

GRAS

Unigene2120_All(SC)*, Unigene10121_All, Unigene4453_All (scarecrow-like), Unigene6482_All (SC), Unigene13312_All (SC), Unigene15630_All, Unigene456_All

 

1* (6)

BTB/POZ

Unigene2160_All, Unigene351_All, Unigene352_All

Unigene11206_All

(4)

C3H

Unigene156_All, Unigene209_All*, Unigene10727_All*⊕

Unigene16285_All, Unigene81_All

2* (3)

GATA

Unigene1952_All*, Unigene10179_All*

Unigene1691_All, Unigene10219_All*

3* (1)

C2H2

Unigene2954_All*,

Unigene2352_All*

2*

dof

Unigene3028_All*,

 

1*

A20AN1

Unigene2954_All*, Unigene10730_All

 

1* (1)

CO-like

 

Unigene4931_All

(1)

Hsf

Unigene13648_All*, Unigene4980_All*

 

2*

Trihelix

 

Unigene2892_All

(1)

ASG

 

Unigene3840_All

(1)

WD

Unigene4225_All

 

(1)

MADs

Unigene4681_All

 

(1)

MACPF

Unigene8197_All

 

(1)

BLH

Unigene8238_All

 

(1)

A-2b

Unigene13648_All*, Unigene4980_All

 

1* (1)

UNE

Unigene4910_All

Unigene10862_All*

1* (1)

rf

Unigene14563_All*

 

1*

MYC

Unigene15000_All*

 

1*

RAX

Unigene1589_All*

 

1*

NF-YC

Unigene16018_All*

 

1*

bZIP

Unigene4820_All,

 

(1)

  1. Lists of TFs in this table included specifically regulated TFs in OM formation and * co-regulated genes in three treatments; ⊕qPCR validation; number in parenthesis referred to the gene number regulated by OM formation.
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BMC Genomics

ISSN: 1471-2164

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