Table 4 List of top 20 repeat sequences originated piRNAs that upregulated in PGCs
piRNA seq. ID | Sequence length | Sequences | Origin | Genomic distribution | PGCs | Stage X | GSCs | CEFs | Fold change |
|---|---|---|---|---|---|---|---|---|---|
(RPKM) | (RPKM) | (RPKM) | (RPKM) | ||||||
ISG_3439104* | 25 | TATTTCCTAACGTCCAGCCTGAACC | Repeat seq. | LINE/CR1:0 | 1147.02 | 13.07 | 13.52 | 0 | 129.42 |
ISG_1952422* | 27 | CCAGAACACACTTGGCCTTCCGGGCTG | Repeat seq. | LINE/CR1:0 | 928.3 | 3.78 | 17.55 | 0 | 130.55 |
ISG_2828838 | 25 | CACTGATGGACAGGTCCTGGCTAAG | Repeat seq. | LTR/ERVL:1 | 251.4 | 2.68 | 3.92 | 0 | 114.24 |
ISG_1920655* | 27 | ACTGAACACAGCACTCGAGGTGAGGCC | Repeat seq. | LINE/CR1:0 | 242.5 | 2.83 | 3.49 | 0 | 115.05 |
ISG_587310 | 25 | TATTTCCTAACGTCCAGCCTGAATC | Repeat seq. | Ambi | 215.07 | 1.73 | 2.29 | 0 | 160.43 |
ISG_434349 | 27 | TCCTTGCACAGCCACGACAGTCGCCTG | Repeat seq. | LINE/CR1:0 | 205.56 | 0.31 | 3.6 | 0 | 157.61 |
ISG_3712010 | 25 | TACCTGTAGAACCCCTTCTTGTTGT | Repeat seq. | LINE/CR1:0 | 194.22 | 0.63 | 4.03 | 0 | 124.93 |
ISG_347271 | 28 | TTGAACCTCATTAGGTTTTCGTGGGACC | Repeat seq. | LINE/CR1:0 | 175.2 | 2.36 | 2.83 | 0 | 101.14 |
ISG_471296 | 27 | TGCACTCGATGCCATCGTCTGTCACTG | Repeat seq. | LINE/CR1:0 | 169.35 | 0.47 | 4.03 | 0 | 112.74 |
ISG_2635821 | 26 | TTCCAGCGTTGTGTGATTTTAGAAGC | Repeat seq. | LINE/CR1:1 | 155.45 | 0.63 | 3.16 | 0 | 123 |
ISG_2618644 | 26 | TGCTGACGGACTTCCCTGGGCCTGCT | Repeat seq. | LTR/ERVL:1 | 150.81 | 0.16 | 1.85 | 0 | 225 |
ISG_3554587 | 29 | TCTGATCATCCTCTGGACTTGCTCCAAGA | Repeat seq. | LINE/CR1:0 | 149.72 | 0.63 | 2.51 | 0 | 143.16 |
ISG_3050277 | 25 | TTTTGACTTAAAAAACGTGTGCGCC | Repeat seq. | LTR/ERVL:1 | 144.48 | 2.99 | 1.09 | 0 | 106.18 |
ISG_1247918 | 25 | AAGAAAGACGCAGAGCTCTTGGACC | Repeat seq. | LINE/CR1:1 | 130.09 | 0.79 | 3.05 | 0 | 101.63 |
ISG_2559548 | 26 | TTTCCATCCCTCACTGTCTCTGAGCT | Repeat seq. | LINE/CR1:0 | 120.94 | 0.16 | 2.07 | 0 | 162.79 |
ISG_2994213 | 27 | TGTACCTGTAGAACCCCTTCTTGTTGT | Repeat seq. | LINE/CR1:0 | 119.36 | 0 | 1.74 | 0 | 205.28 |
ISG_2004249 | 23 | TTTCCTAACGTCCAGCCTGAACC | Repeat seq. | LINE/CR1:0 | 110.95 | 0.16 | 1.64 | 0 | 185.66 |
ISG_988698 | 26 | GATGATCAGAGGGCTGGAGCACCTCC | Repeat seq. | LINE/CR1:1 | 110.22 | 0.63 | 1.96 | 0 | 127.55 |
ISG_1691836 | 26 | TGTACCTGTAGAACCCCTTCTTGTTG | Repeat seq. | LINE/CR1:0 | 109.73 | 0.16 | 1.64 | 0 | 183.61 |
ISG_2499527 | 25 | AGGAATGGGCTGCCCAGAGAGGTGG | Repeat seq. | LINE/CR1:1 | 108.39 | 0 | 1.53 | 0 | 213.04 |