Table 2 Classification and distribution of the repetitive elements detected among Passiflora edulis BAC-end sequences
From: Begin at the beginning: A BAC-end view of the passion fruit (Passiflora) genome
Class | Number of elements | Number of masked nucleotides | Percentage of nucleotides |
|---|---|---|---|
Class I retroelements | 3, 401 | 1, 144, 329 | 18.47 |
LTR elements | 3,327 | 1,123,137 | 18.13 |
Ty1/Copia | 1,606 | 487,318 | 7.87 |
Gypsy/DIRS1 | 1,706 | 630,816 | 10.18 |
Unclassified LTRs | 15 | 5,003 | 0.08 |
LINEs/SINEs | 74 | 21,192 | 0.34 |
L1/CIN4 | 71 | 21,043 | 0.34 |
Other LINEs/SINEs | 3 | 149 | 0.00 |
Class II DNA transposons | 38 | 2, 881 | 0.05 |
hobo-Activator | 7 | 644 | 0.01 |
Tourist/Harbinger | 1 | 47 | 0.00 |
Mirage | 1 | 37 | 0.00 |
Unclassified transposons | 29 | 2,155 | 0.04 |
Unclassified elements | 7 | 1,192 | 0.02 |
Small RNA | 2 | 162 | 0.00 |
Satellites | 1 | 41 | 0.00 |
Simple repeats | 327 | 15, 514 | 0.25 |
Low complexity | 1, 000 | 51, 760 | 0.84 |
Total repetitive DNA | 4,776 | 1, 215, 879 | 19.63 |