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Table 1 Number of raw reads obtained from samples obtained from the Illumina GAIIx sequencing

From: A genomic perspective to assessing quality of mass-reared SIT flies used in Mediterranean fruit fly (Ceratitis capitata) eradication in California

Sample

Rep

Number of raw read pairs

Number of reads mapped to filtered transcriptome (%)

Vienna7 adults, γ-irradiated

1

13,192,327

6,136,921 (46.52)

Vienna7 adults, γ-irradiated

2

9,595,143

5,075,214 (52.89)

Vienna7 adults, γ-irradiated

3

11,360,677

5,236,787 (46.10)

Vienna7 pupae, γ-irradiated

1

10,582,671

5,035,268 (47.58)

Vienna7 pupae, γ-irradiated

2

9,548,323

4,830,945 (50.59)

Vienna7 pupae, γ-irradiated

3

11,750,225

5,906,277 (50.27)

Vienna7 adults

1

11,893,729

5,540,467 (46.58)

Vienna7 adults

2

9,207,645

4,767,827 (51.78)

Vienna7 adults

3

11,887,697

6,077,674 (51.13)

Vienna7 pupae

1

13,700,496

7,150,689 (52.19)

Vienna7 pupae

2

5,836,933

3,234,876 (55.42)

Vienna7 pupae

3

4,698,850

2,473,191 (52.63)

Wild Hawaiian adults

1

7,463,699

3,524,921 (47.23)

Wild Hawaiian adults

2

10,915,724

4,983,183 (45.65)

Wild Hawaiian adults

3

11,412,891

4,996,645 (43.78)

Wild Hawaiian pupae

1

12,312,072

5,689,915 (46.21)

Wild Hawaiian pupae

2

11,240,088

5,219,322 (46.43)

Wild Hawaiian pupae

3

13,587,015

6,175,680 (45.45)

Total

 

190,186,205

92,055,802