From: TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads
Tool | Implementation | CPU time in alignment (minutes) | CPU time in estimation (minutes) | Memory (GB) |
---|---|---|---|---|
TIGAR2 | Java | 18 | 12 | 8 |
TIGAR1 | Java | 18 | 53 | 8 |
RSEM | C++ | 10 | 24 | 2 |
TopHat-Cufflinks | C++ | 1,379 | 5 | 4 |