Table 1 The performance comparison between major assembly tools and HyDA-Vista on the error-corrected standard multicell E.coli dataset (6.2 Gbps, 28 million reads, 100 bp, treated as single-end) using QUAST in default mode [43].
From: HyDA-Vista: towards optimal guided selection of k-mer size for sequence assembly
Assembler | NGA50 | NA50 | Largest (bp) | Total (bp) | MA | GF (%) | Unaligned (bp) |
|---|---|---|---|---|---|---|---|
SOAPdenovo | 32,032 | 35,343 | 101,201 | 4,304,232 | 3 | 95.2 | 3,421 |
ABySS | 31,237 | 32,987 | 110,012 | 4,530,701 | 0 | 97.56 | 0 |
SPAdes | 60,338 | 60,768 | 173,976 | 4,545,775 | 0 | 97.8 | 3,001 |
IDBA | 57,826 | 58,549 | 173,964 | 4,538,426 | 0 | 97.7 | 2,349 |
HyDA | 36,292 | 39,069 | 123,771 | 4,524,075 | 0 | 97.4 | 0 |
HyDA-Vista | 82,838 | 94,910 | 204,602 | 4,544,286 | 0 | 97.9 | 0 |