From: Time-course human urine proteomics in space-flight simulation experiments
Time range | early | intermediate | late |
---|---|---|---|
week of isolation | before isolation and week 1-6 | week 7 - 11 | week 12 - 15 and after isolation |
NaCl consumption | 12 g/day (week 1-6) | 9 (week 7-9), 12 (week 10) and 6 g/day (week 11) | 6 g/day (week 12-15) |
Activated biological processes (enrichment analysis) | inflammation, cell adhesion, blood coagulation, proteolysis, angiogenesis, Ca2+ binding, extracellular region | cell division, lipid metabolism, skin development, keratinization, chromatin remodeling, response to oxidative stress and hypoxia, regulation of apoptosis | response to drug/toxin, small molecule metabolic process, intracellular, Mg2+ binding, response to Zinc, Cell death, G-protein coupled receptor, regulation of blood pressure (renin/angiotensin) |
Activated pathways (PSF analysis) | immune response; nervous system; nucleotide, amino acid and lipid (butanoate) metabolism | digestive system; metabolism; regenerative processes (Wnt-signaling pathway and N-glycan biosynthesis) | signal transduction; response to stress (p53-, mTOR-signaling pathway), energy metabolism (ubiquinone biosynthesis) |
Activated tissue responses | Liver, kidney, pancreas, (partly skin) | muscle | testis, stomach, (partly liver and kidney) |
Relation to previous results | NaCl related interactome activated [10], NaCl storage in an osmotically inactive form and micro-vascularization [6, 7], renal proteins activated [11] | blood pressure decrease and aldosterone level increase [4] | |
Total protein abundance | increasing and high | decreasing | low |
Percentage of proteins up-regulated | 27% | 20% | |
Percentage of invariant, noisy and single spiked proteins | >50% | ||
Up-regulated modules | G, E, D, M, N, L | J, P, Q | R |
Down-regulated modules | R, Q, J, P | D, E, G, Q, R | G, E, D, M, N, L, P |
Module-related proteins (differential abundance) | see Additional file 2 | ||
Module-related proteins (absolute abundance) | see Additional file 3 |