Figure 3

Distribution and functional annotation of the predicted composite AuxREs/Y-patch. Panel A depicts the distribution of potential composite AuxREs relative to TSS (position +1). Panel B shows the functional annotation (GO) of the genes having the composite element AuxRE+/Y-patch+ in their regulatory regions. Functional annotation was performed using AgriGO analysis tool [26]. Annotation is represented as a graph in which each node represents a definite GO term with the value of FDR in brackets. The color of the node, from yellow to deep orange reflects the level of significance of the term which is represented by a given node. Each node is connected with the other by edges of different structure and color (annotation is given).