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Table 3 The overlapping numbers of mapped genes from 50-cell sample, detected proteins in all proteomic runs to transcriptomics data.

From: Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells - a benchmarking study

  

# mapped genes

Presence in transcriptomics data

50-cell sample

Run 1

Run 2

Run 3

Intersection

4,231

4,019

4,137

3,561

3,519 (83.17%)

3,344 (83.20%)

3,437 (83.08%)

2,967 (83.32%)

 

Twice

4,119

3,423 (83.10%)

 

Union

4,273

3,560 (83.31%)

  

# detected proteins

 

All proteomic runs

4,957

3,989 (80.50%)