From: Characterization of familial breast cancer in Saudi Arabia
 | case_193 | case_195 | case_264 | case_320 | case_573 | case_574 | case_903 |
---|---|---|---|---|---|---|---|
Total reads | 108,381,083 | 84,054,514 | 95,591,607 | 89,014,487 | 107,417,081 | 89,456,100 | 62,675,973 |
Mappable reads (%) | 73% | 67% | 72% | 73% | 78% | 64% | 78% |
Mappable yield (bp) | 3,958,042,800 | 2,795,592,150 | 3,425,085,950 | 3,231,704,750 | 4,145,428,250 | 2,865,812,200 | 2,459,039,800 |
On-target yield (bp) (%) | 46% | 61% | 74% | 47% | 63% | 68% | 52% |
Coverage of target region (>10x) | 71.24 | 67.68 | 67.21 | 64.93 | 80.59 | 70.16 | 64.64 |
Mean read depth of targeted region | 34.63 | 33.02 | 45.09 | 28.08 | 49.87 | 37.42 | 24.14 |
Mean read depth of called variants | 36.54 | 72.34 | 68.94 | 39.41 | 56.47 | 44.61 | 33.35 |
Number of high quality variants | 23959 | 1788 | 5823 | 10019 | 18691 | 14113 | 9623 |
Number of missense, nonsense, splice, and indel variants | 1861 | 154 | 352 | 619 | 1240 | 1035 | 616 |
Number of filtered damaging rare variants | 53 | 6 | 21 | 39 | 105 | 91 | 45 |
Number of filtered damaging novel variants | 141 | 46 | 108 | 80 | 116 | 129 | 71 |
Number of filtered damaging novel indels | 85 | 38 | 129 | 55 | 54 | 38 | 123 |