Table 1 Topological (avg: d a , max: d m ) & Temporal Distances (avg: t a , max: t m ) of the inferred pseudogenization vertices from the true (synthetic analysis)
Family | mean(d a ) | mean(t a ) | max(d m ) | mean(d m ) | max(t m ) | mean(t m ) | dN/dS | Kappa | Depth |
|---|---|---|---|---|---|---|---|---|---|
1 | 0 | 0.03 | 0 | 0 | 0.13 | 0.03 | 0.3 | 0.2 | 1 |
2 | 1.12 | 0.34 | 3 | 3 | 0.86 | 0.68 | 0.3 | 0.8 | 6 |
3 | 0 | 0.03 | 0 | 0 | 0.14 | 0.04 | 0.3 | 1.2 | 2 |
4 | 0 | 0.22 | 0 | 0 | 0.63 | 0.5 | 0.3 | 1.6 | 1 |
5 | 0.56 | 0.12 | 3 | 3 | 0.33 | 0.24 | 0.3 | 2 | 4 |
6 | 1.3 | 0.13 | 3 | 3 | 0.4 | 0.23 | 0.6 | 0.2 | 4 |
7 | 0 | 0.03 | 0 | 0 | 0.19 | 0.03 | 0.6 | 0.8 | 1 |
8 | 0 | 0.08 | 0 | 0 | 0.26 | 0.15 | 0.6 | 1.2 | 3 |
9 | 0.1 | 0.04 | 1 | 0.1 | 0.12 | 0.04 | 0.6 | 1.6 | 2 |
10 | 0 | 0.16 | 0 | 0 | 0.31 | 0.25 | 0.6 | 2 | 7 |
11 | 0 | 0.14 | 0 | 0 | 0.28 | 0.2 | 0.8 | 0.2 | 2 |
12 | 0 | 0.05 | 0 | 0 | 0.23 | 0.08 | 0.8 | 0.8 | 3 |
13 | 0.35 | 0.32 | 1 | 0.69 | 0.54 | 0.38 | 0.8 | 1.2 | 6 |
14 | 0 | 0.03 | 0 | 0 | 7.0 | 0.03 | 0.8 | 1.6 | 3 |
17 | 0.66 | 0.41 | 1 | 1 | 0.76 | 0.73 | 1.2 | 0.8 | 3 |
18 | 0.88 | 0.39 | 1 | 0.88 | 0.67 | 0.43 | 1.2 | 1.2 | 5 |
19 | 0 | 0.15 | 0 | 0 | 0.21 | 0.15 | 1.2 | 1.6 | 1 |
20 | 0 | 0.11 | 0 | 0 | 0.27 | 0.22 | 1.2 | 2 | 3 |
21 | 0.33 | 0.25 | 1 | 1 | 0.65 | 0.53 | 1.8 | 0.2 | 3 |
22 | 1.4 | 0.42 | 4 | 4 | 0.81 | 0.78 | 1.8 | 0.8 | 5 |
23 | 1.03 | 0.11 | 3 | 1.23 | 0.3 | 0.14 | 1.8 | 1.2 | 4 |
24 | 0.67 | 0.27 | 1 | 1 | 0.67 | 0.43 | 1.8 | 1.6 | 3 |
25 | 0.04 | 0.13 | 3 | 0.04 | 0.45 | 0.13 | 1.8 | 2 | 6 |