Figure 1

Results on the 11-taxon simulated datasets. We show mean RF rates with standard error bars for 50 replicates using all four methods (RAxML shows concatenation). The rows are for four 11-taxon (10 ingroup taxa and one outgroup taxon) model conditions with varying ILS levels, ranging from very low (M1) to very high (M4). The columns are for the different numbers of genes. Within a subfigure, we show results with changing numbers of sites per locus (10-200). Note that the y-axis range changes for the fourth row, due to the much higher error rates under the highest ILS model condition. Sequence evolution on these datasets deviates from the strict molecular clock.