Table 4 Two differentially expressed genes (Calcr, top table, and Adh7, bottom table) that are NOT detected by XBSeq, showing the exonic, non-exonic, and predicted true signals (estimated by using Eq.3), from 3 biologial replicates for each WT and MYC mouse tissue.
From: Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads
| Â | Read counts of gene Calcr | Â | Â | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | WT (3 replicates) | MYC (3 replicates) | Â | Â | ||||||||
|  | 1 | 2 | 3 | μ | σ | 1 | 2 | 3 | μ | σ | FC 1 | p 2 |
Exonic | 22 | 4 | 20 | 15.3 | 9.9 | 68 | 68 | 64 | 66.7 | 2.3 | 3.3 | 0 |
Non-exonic | 64 | 4 | 64 | 44.0 | 34.6 | 193 | 218 | 199 | 203.3 | 13.1 | Â | Â |
Predicted true signal | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| Â | Read counts of gene Adh7 | Â | Â | |||||||||
| Â | WT (3 replicates) | MYC (3 replicates) | Â | Â | ||||||||
|  | 1 | 2 | 3 | μ | σ | 1 | 2 | 3 | μ | σ | FC 1 | p 2 |
Exonic | 633 | 438 | 429 | 500.0 | 115.3 | 827 | 1149 | 708 | 894.7 | 228.2 | 1.5 | 0.01 |
Non-exonic | 430 | 241 | 322 | 331.0 | 95 | 643 | 771 | 513 | 642.3 | 129.0 | Â | Â |
Predicted true signal | 203 | 197 | 107 | 169.0 | 53.8 | 184 | 378 | 195 | 252.3 | 109.0 | 1.2 | 0.53 |