From: Computational methods and resources for the interpretation of genomic variants in cancer
Method | URL | Ref |
---|---|---|
Cancer gene prioritization | ||
ActiveDriver | [73] | |
ContrastRank | [75] | |
DrGaP | [70] | |
MuSiC | [68] | |
MuSigCV | [69] | |
OncodriveCLUST | [74] | |
OncodriveFM | [64] | |
Simon's tool | [71] | |
Cancer variant annotation tools | ||
CanPredict | [91] | |
CHASM | [90] | |
DrCancer | [89] | |
FATHMM | [92] | |
MutationAssessor | [78] | |
TransFIC | [93] | |
Pathway and network analysis | ||
Dendrix | [113] | |
HotNet2 | [115] | |
MDPFinder | [107] | |
MEMo | [105] | |
PathScan | [114] | |
PARADIGM | [116] | |
Classification of tumor subclonal variants | ||
ABSOLUTE | [122] | |
BTP | [123] | |
CloneHD | [126] | |
PhyloSub | [124] | |
PyClones | [125] |