Table 2 Filtering per array.
Arrays hybridized with amplified material | Arrays hybridized with non-amplified material | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Array number | 1 | 2 | 5 | 6 | 7 | 9 | 10 | 11 | 3 | 4 | 8 | 12 |
Genes flagged by Genepix | 5192 | 2155 | 1007 | 2152 | 3151 | 2209 | 3212 | 1073 | 4750 | 4909 | 2903 | 4374 |
41.55% | 17025% | 8.06% | 17.22% | 25.21% | 17.68% | 25.70% | 8.59% | 38.01% | 39.28% | 23.23% | 35.00% | |
Genes flagged manually | 15 | 1 | 3 | 5 | 2 | 6 | 10 | 1 | 116 | 15 | 4223 | 16 |
0.12% | 0.008% | 0.024% | 0.04% | 0.016% | 0.048% | 0.08% | 0.008% | 0.93% | 0.12% | 33.79% | 0.13% | |
Additionally Filtered by (spot-background) / background > 1 | 2078 | 1621 | 1055 | 2081 | 2081 | 2033 | 1680 | 2596 | 3226 | 2223 | 2117 | 2521 |
16.63% | 12.97% | 8.44% | 16.65% | 16.15% | 16.27% | 13.44% | 20.77% | 25.81% | 17.79% | 16.94% | 20.17% | |
Sum | 7285 | 3777 | 2065 | 4238 | 5171 | 4238 | 4902 | 3670 | 8092 | 7147 | 9243 | 6911 |
58.30% | 30.22% | 16.52% | 33.91% | 41.38% | 33.40% | 39.22% | 29.37% | 64.75% | 57.19% | 73.96% | 55.30% | |