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Table 2 Detection of the conserved gene order between Halobacterium sp. NRC-1 and halophiles. Sequence reads matched to observed H. sp. NRC-1 genes, number of physically linked genes, and gene names or numbers are listed for each halophile.

From: Low-pass sequencing for microbial comparative genomics

Halobaculum gomorrense

   

Hg11_0191

3

1384,rad3a, yvoF

Hg2_0160

2

rpl30p,rps5p

Hg12_0134

3

1564,1561,1562

Hg1_0175

2

2149,etlB

Hg8_0102

3

rpI1 4,prpl24,prps4e

Hg12_0110

2

cbiJ,cbiC

Hg12_0124

3

642,nolC,nuoL

Hg9_0124

2

1087,1086

Hg1_0132

2

rps13p,rps4p

Hg6_0157

2

ribG,1257

Hg13_0114

2

rpl24e,ndk

Hg9_0157

2

rpl13p,rps9p

Hg1_0114

2

5062,5063

Hg12_0125

2

ilVE1,388

Hg2_0136

2

2160,2162

Hg10_0188

2

cobH,cbiH

Hg8_0104

2

359,357

Hg8_0128

2

5191,5189

Hg3_0132

2

2089,2091

Hg1_0174

2

rpl32e,rpl6p

Hg13_0174

2

255,256

Hg1_0168

2

417,419

Hg12_0169

2

gpdB,gpdA2

Hg7_0133

2

cat,maoC1

Hg13_0179

2

gmd,graD3

Hg11_0101

2

sus,trn30

Hg5_0173

2

1641,1642

Hg6 0161

2

2316,cbiO1

Hg12_0172

2

uroM,hem3

   

Hg10_0169

2

cbiL,cbiF

Natrialba asiatica

Hg3_0178

2

riml,can

Na5_0165

3

rps3p,1699,rpl29p

Hg8_0132

2

1519,1518

Na7_0184

2

nolD,ndhG4

Hg1_0123

2

tfeA,755

Na11_0183

2

fbp,686

Hg7_0108

2

rpl13p, rpl18e

Na6_0131

2

2534,2535

Hg8_0147

2

trn24,1390

Na1_0196

2

1530,mmdA

Hg10_0108

2

801,trn12

Na3_0196

2

yusM,2121

Hg12_0123

2

rpl19e,rpl18p

Na8_0152

2

1900,1901

Hg5_0122

2

fbp,683

Na1_0112

2

po/B1,520

Hg13_0193

2

2637,bchP

Na11_0168

2

rad24c,2371

Hg5_0165

2

2098,trn36

Na2_0190

2

fbp,686

Hg9_0123

2

sus,trn30

Na1_0154

2

hUtG,hutl

Hg8_0119

2

1429,1431

Na4_0122

2

hpyA,aup

Hg12_0105

2

gatA,gatC

Na6_0176

2

6070,6071

Hg3_0115

2

gapB,hsp2

Na4_0158

2

rp/32e,rpl19e

Hg3_0187

2

pyrE1,gcd

Na5_0119

2

1934,ftsZ3

Hg10_0181

2

854,857

Na10_0123

2

1845,ansA

Hg13_0115

2

5069,5071

Na8_0119

2

1296,1297

Hg5_0113

2

hpyA,aup

Na3_0134

2

mamA,mamB

Hg8_0146

2

1783,panF

Na1_0138

2

2474,2475

Hg9_0194

2

1235,1236

Na10_0113

2

htlB,cmk

Hg6_0102

2

traB,875

Na12_0184

2

220,219

Hg9_0115

2

256,258

Na1_0125

2

525,527

Hg10_0131

2

1823,moaB

Na11_0176

2

404,405

Hg2_0106

2

alkK,gdhB

Na12_0110

2

dtd,247

Hg11_0194

2

2205,pmu1

Na8_0103

2

2369,rad24b

Hg5_0170

2

glyA,folD

Na9_0165

2

2306,2307

Hg2_0125

2

purK,purE

Na11_0175

2

rps6e,2515

Hg4_0125

2

2098,trn36

Na4_0146

2

gun,purM

Hg8_0107

2

rrlA,rrlB

Na5_0164

2

296,pnm

Hg2_0171

2

ndhG1,nolB

Na9 0164

2

rnh,1982

Halorubrum lacusprofundi

Haloarcula marismortui

HI10_0165

3

rps14p,rpl6p,rps8p

Hm10_0182

3

767,768,769

HI4_0114

2

5166,5167

Hm11_0113

3

1558,1559,cbiH

HI6_0133

2

rad24c,2371

Hm8_0149

2

trkA4,phoT3

HI12_0110

2

rps5p,rpl18p

Hm12_0196

2

gpdB,gpdA2

HI11_0135

2

943,945

Hm7_0109

2

mal,mamB

HI5_0115

2

alkK,gdhB

Hm8_0151

2

hpyA,rpa

HI11_0152

2

alaS,2282

Hm4_0135

2

2555,trn44

HI7_0101

2

pri,1471

Hm5_0163

2

1475,1476

HI11_0159

2

981,982

Hm4_0159

2

2515,2516

HI2_0111

2

6060,6061

Hm1_0167

2

576,578

HI2_0107

2

pmm,2277

Hm6_0177

2

6434,6437

HI7_0142

2

rpl3p,1688

Hm10_0123

2

trpE2,383

HI5_0125

2

trp1,124

Hm11_0186

2

2024,yyal

HI2_0193

2

rps4p,rps11p

Hm1_0106

2

rad3a,1382

HI8_0104

2

2333, cysG

Hm10_0192

2

sop1 , htr1

HI7_0124

2

576,578

Hm9_0134

2

mal, mamB

HI9_0183

2

1613,mvaB

Hm8_0125

2

1845,ansA

HI12_0125

2

5131,5132

Hm1_0150

2

2369,rad24b

HI7_0158

2

2316,cbiO1

Hm4_0112

2

1823,moaB

HI10_0161

2

citE.,gdhA1

Hm6_0130

2

533,534

HI2_0112

2

2241,rfcC

Hm6_0112

2

1823,moaB

HI5_0112

2

2645, vacB

Hm6_0149

2

alkK,gdhB

HI9_0130

2

pgi,1993

Hm1_0165

2

266,267

HI5_0127

2

1578,1580

Hm11_0158

2

noxA,1806

HI6_0173

2

6198,6197

Hm7_0164

2

dsa,lpdA

HI11_0150

2

2089, trm1

Hm5_0174

2

2160,2162

HI11_0160

2

981,982

Hm11_0116

2

mal,mamB

HI5_0134

2

trn41,rrs

Hm12_0116

2

gpdB,gpdA2

HI1_0162

2

trn42,rrlB

Hm8_0137

2

dsa,lpdA

HI6_0103

2

1672,1670

Hm1_0104

2

1296,1297

HI6_0131

2

pri,1468

Hm12_0184

2

rps6e,2515

HI4_0176

2

trpB,trpC

Hm9_0104

2

758,759

HI10_0168

2

rpl14p,rps17p

Hm11_0176

2

ndhG1,ndhG5

HI2_0170

2

2149,ettB

Hm11_0135

2

trn46,rps10p

HI9_0170

2

ugpE,ugpC

Hm4_0154

2

yvrO,3

HI5_0149

2

rpl6p,rps8p

Hm4_0136

2

2370,rad24b

HI12_0187

2

2581,2582

Hm2_0113

2

hutG,hutl

HI6_0121

2

ndhG1,ndhG5

Hm12_0152

2

asnA,865

   

Hm8_0109

2

1558,cdiH

   

Hm7_0186

2

230,231

   

Hm8_0134

2

361,nfi

   

Hm8_0180

2

rpl14p,rpl24p

   

Hm8_0177

2

711,713

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