Table 3 List of genes evaluated using qrtPCR. For each gene, the microarray and qrtPCR brain/pancreas log2 ratios are listed. Raw CT values, qrtPCR primer/probe sequences, and corresponding array probe names are available in supplementary material [see additional files 1, 2, and 3, respectively].
Gene | NCBI Acc | Description | qrtPCR | CodeLink | GeneChip |
|---|---|---|---|---|---|
MLP | NM_023009.1 | MARCKS-like protein | 2.33 | 2.08 | 4.20 |
COX7A2L | NM_004718.1 | cytochrome c oxidase subunit VIIa polypeptide 2 like | 1.19 | 0.10 | -0.31 |
COL6A3 | NM_004369.1 | collagen, type VI, alpha 3, transcript variant 1 | -4.80 | -4.75 | -5.02 |
PRDX3 | NM_006793.1 | peroxiredoxin 3, nuclear gene encoding mitochondrial protein | 0.82 | 0.81 | -0.42 |
CDKN1A | NM_000389.1 | cyclin-dependent kinase inhibitor 1A | -3.25 | -2.89 | -3.47 |
NUTF2 | NM_005796.1 | nuclear transport factor 2 | 1.25 | 1.25 | -0.12 |
CEBPD | NM_005195.1 | CCAAT/enhancer binding protein, delta | -0.54 | 0.41 | -0.07 |
COL9A3 | NM_001853.1 | collagen, type IX, alpha 3 | 2.62 | 2.35 | 2.22 |
GLDC | NM_000170.1 | glycine dehydrogenase | 5.93 | 3.33 | 2.85 |
TGFA | NM_003236.1 | transforming growth factor, alpha | 2.44 | 1.54 | 1.43 |
GALK2 | NM_002044.1 | galactokinase 2 | 0.64 | 1.73 | -0.39 |
ESR1 | NM_000125.1 | estrogen receptor 1 | 0.03 | 0.39 | -0.28 |
FMO3 | NM_006894.2 | flavin containing monooxygenase 3 | -1.06 | -0.49 | 1.22 |
AKT1 | NM_005163.1 | v-akt murine thymoma viral oncogene homolog 1 | 0.14 | 0.40 | 0.34 |
PRPS1 | D00860.1 | phosphoribosyl pyrophosphate synthetase subunit I | 1.53 | 0.62 | -0.04 |
RPA3 | NM_002947.1 | replication protein A3 | 1.30 | 0.57 | -0.97 |
SLIT2 | NM_004787.1 | slit homolog 2 (Drosophila) | 2.81 | 1.64 | 0.51 |
HIC | AF054589.1 | HIC protein isoform p40 and HIC protein isoform p32 | 0.70 | 1.83 | -0.22 |
HSA275986 | NM_018403.1 | transcription factor SMIF | 1.51 | 1.41 | -0.06 |
TFCP2L1 | NM_014553.1 | transcription factor CP2-like 1 | -1.55 | -1.23 | -0.66 |
PPIE | NM_006112.1 | peptidylprolyl isomerase E (cyclophilin E) | 0.00 | -0.29 | -1.10 |
FLJ14800 | NM_032840.1 | hypothetical protein FLJ14800 | 0.97 | 1.41 | 1.20 |
MGC24039 | AL137364.1 | cDNA DKFZp434E0626 | 2.70 | 1.92 | 2.29 |
USF1 | X55666.1 | late upstream transcription factor | 2.18 | 0.81 | -0.86 |
B4GALT7 | NM_007255.1 | xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 | 0.45 | -0.41 | -0.44 |