Table 1 Applications and the relevant data in the database.
From: i-Genome: A database to summarize oligonucleotide data in genomes
Database entries | Entry types | Biological applications |
|---|---|---|
Oligonucleotide occurrences | Positions | 1. Oligonucleotide analysis for regulatory sequences 2. Oligonucleotide probe design 3. Primer design |
Oligonucleotide frequencies | Counts | 1. Oligonucleotide analysis for regulatory sequences 2. Evolutionary analysis 3. Oligonucleotide probe design 4. Primer design |
Gene coding regions | Positions | 1. Oligonucleotide analysis for regulatory sequences 2. Evolutionary analysis 3. Oligonucleotide probe design 4. Primer design |
Repetitive element frequencies (LINE, SINE, Alu, and so on) | Counts | Evolutionary analysis |
Repetitive element occurrences | Positions | Evolutionary analysis |
Tandem repeats | Positions | Prediction for genetic disease marker |