Table 3 Locations of unitags having a single match in genome but no transcript match
From: Evaluation of the chicken transcriptome by SAGE of B cells and the DT40 cell line
| Â | Unitags | Bases searched next to annotated Ensembl transcripts | Matching unitags | Matches only downstream of Ensembl transcripts | Matches only upstream of Ensembl transcripts | Matches upstream and downstream of Ensembl transcripts |
|---|---|---|---|---|---|---|
Total | 13,427 | Â | Â | Â | Â | Â |
Within Ensembl transcript boundaries | 1,637 | Â | Â | Â | Â | Â |
Outside Ensembl transcript boundaries | 11,177 | 100 | 409 | 362 | 46 | 1 |
| Â | Â | 200 | 732 | 668 | 64 | 2 |
| Â | Â | 500 | 1,651 | 1,496 | 143 | 12 |
| Â | Â | 1,000 | 2,896 | 2,553 | 262 | 81 |
| Â | Â | 5,000 | 7,169 | 5,439 | 669 | 1,061 |
| Â | Â | 10,000 | 8,639 | 5,627 | 911 | 2,101 |