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Table 6 Xenopus Long Open Reading Frames (>= 600 nt) without homology to major model organism protein sequences. ORF sequences were compared to all available EST data using TBLASTN. The 46 sequences shown here have homologies to ESTs from other organisms (E < 0.01). For each TC, the number of ESTs in the TC and the accession, SignalP and TMHMM results, and description and E-value of the best hit is shown. Additionally (not shown here), both signal peptides and transmembrane domains could be predicted in: clSignal peptides only in: cl4857_sin8, cl11312_sin2, cl11866_ctg2, cl14117_ctg1, cl16548_ctg1, cl19372_ctg2; Transmembrane domains only in: cl3994_ctg1, vimsin144578, cl18799_ctg1, cl18978_ctg1, cl18978_ctg2, cl25690_ctg1, cl23256_ctg1.

From: XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis

Contig/ORF

#ESTs

Accession

SignalP

TM

Description (best hit)

E-value

cl9703_ctg1_1

53

CN060851

  

Ambystoma tigrinum tigrinum

5.00E-112

cl15798_ctg1_1

4

CN061938

  

Ambystoma tigrinum tigrinum

6.00E-53

cl9914_ctg1_1

11

BX864357

  

Oncorhynchus mykiss

4.00E-45

vmsin143901_1

1

CK600275

  

Rattus norvegicus

4.00E-43

cl10823_ctg1_1

3

CA471690

  

Danio rerio

5.00E-39

cl2563_ctg2_1

10

AV913994

  

Hordeum vulgare subsp. Vulgare

9.00E-35

cl1723_ctg1_1

12

BU129000

  

Gallus gallus

2.00E-34

vmsin213651_1

1

CD218114

  

Gallus gallus

7.00E-30

cl15560_ctg1_1

3

CK871392

  

Danio rerio

2.00E-24

cl10197_ctg1_1

3

CA975598

  

Danio rerio

2.00E-22

cl11603_ctg1_1

4

AJ456928

  

Gallus gallus

7.00E-22

cl2506_ctg1_1

7

BJ494402

  

Oryzias latipes

3.00E-19

vmsin144578_1

1

BU241764

  

Gallus gallus

1.00E-17

cl24411_ctg1_1

2

BW379961

  

Ciona intestinalis

2.00E-16

cl25096_ctg1_1

2

BX269216

  

Gallus gallus

5.00E-16

vmsin117573_1

1

BU114361

  

Gallus gallus

3.00E-14

vmsin141365_1

1

BI385350

  

Amphioxus Branchiostoma fl.

3.00E-14

vmsin275700_1

1

CN024469

  

Danio rerio

4.00E-14

cl5895_ctg1_1

12

BX870166

  

Oncorhynchus mykiss

6.00E-14

cl18998_ctg1_1

2

BW156550

  

Ciona intestinalis

8.00E-13

cl5042_ctg1_1

14

CN316430

  

Danio rerio

3.00E-12

cl9402_ctg2_1

2

AJ448952

  

Gallus gallus

2.00E-11

cl19097_ctg1_1

4

CN023422

yes

 

Danio rerio

2.00E-09

cl4943_ctg1_1

4

AJ450094

  

Gallus gallus

5.00E-09

cl19576_ctg1_1

2

BX862425

  

Oncorhynchus mykiss

4.00E-08

vmsin9176_1

1

CO051215

  

Leucoraja erinacea

1.00E-07

cl5371_ctg1_1

9

CD295994

  

Strongylocentrotus purpuratus

5.00E-07

cl10375_ctg1_1

9

BU133150

yes

 

Gallus gallus

7.00E-07

cl3127_ctg2_1

19

CF577195

  

Saccharum sp.

2.00E-05

vmsin5140_1

1

BM265659

  

Danio rerio

6.00E-05

cl15473_ctg1_1

8

CN502421

  

Danio rerio

7.00E-05

cl3097_ctg2_1

30

CA374396

  

Oncorhynchus mykiss

8.00E-05

cl9923_ctg1_1

2

DAA01768

  

Lytechinus variegatus

1.00E-04

cl15340_ctg1_1

14

CN180033

yes

1

Danio rerio

3.00E-04

cl11246_ctg1_1

6

BX302229

  

Oncorhynchus mykiss

5.00E-04

cl4857_ctg3_1

7

BF718744

  

Homo sapiens

6.00E-04

cl18267_ctg1_1

2

AAS58046

  

Babesia bovis

0.001

cl5917_ctg1_1

6

CN004343

  

Canis familiaris

0.002

cl9934_ctg1_1

4

CD740019

yes

2

Gallus gallus

0.002

cl3233_ctg1_3

12

CN506386

yes

5

Danio rerio

0.003

cl22258_ctg1_1

2

BM485921

  

Gallus gallus

0.004

cl14723_ctg1_1

3

BF037758

  

Homo sapiens

0.005

cl5206_ctg1_1

9

BG166355

  

Homo sapiens

0.005

cl5199_ctg2_1

8

BM627372

yes

1

Anopheles gambiae

0.006

vmsin18077_1

1

BX877871

yes

1

Oncorhynchus mykiss

0.007

cl5686_ctg1_1

2

BG783827

  

Strongylocentrotus purpuratus

0.008

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